<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03663

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length835
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.485
Instability index56.98
Isoelectric point8.71
Molecular weight90050.73
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03663
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     276.95|      38|      38|     659|     696|       1
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  508-  544 (59.53/12.37)	NAQ.QQQQQ.QQ.Q.....................................QQQQQPPPKYVKiWEG.TLSGQ....RQGQP
  609-  683 (47.79/ 8.65)	EKKLCAVIQLPS.QtlllsvsdkagrligmlfpgdmvvfkpqvptqqppmqQQQLQQQQNQLQ.QQN.QLHQQ....HQLQP
  684-  726 (51.16/ 9.72)	QNQLQQQHQLQQ.Q...................................lqQQQLQQHM.QLQ.TQGlPLQQQqsqgHPLQ.
  727-  761 (68.25/15.14)	QQQMQ...QMQQ.Q.....................................QQQQQIQQMQQQ.QQM.QQMQQ....QQQQP
  775-  816 (50.21/ 9.42)	TGMGQQQPQMQQpQ..............................mvgagmgQQYMQGHGRTVQ.Q.....MMQ....GKMAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.73|      21|      24|     409|     431|       2
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  414-  439 (25.23/12.50)	TGNSNIAVSSSLGGiqSNigiSGPPV
  480-  503 (24.50/ 7.03)	PGMAQQAGVNSLGV..TNssaMNMPI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     313.73|      83|      89|     127|     214|       3
---------------------------------------------------------------------------
  127-  214 (129.34/106.65)	HEVQKHCILVAA..SNPYPLPTPVYRPLvqSSDHKENNDGAKESCLADAETVAKSFAQCSVSlSVVSPKqlPTL...............KAIYNAAKRNPRAADP
  218-  285 (106.58/72.15)	HAKNPHFLVLLS..DNFLEARTALSRPL..PGNLVTNHPITKMDTAATSVPVPTSNGNPSVN....GP..........................MLTRQPNG...
  286-  361 (77.81/50.08)	........VVANikTEPTTLPPMVSAPA.................FSHVTPVANGVSQ.GLS.SVQSPS..PSLisqetnlandsvqehKPLINPIQQSIRPGGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03663 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGN
2) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILN
4) QMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLG
6) TNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEG
377
243
311
750
430
494
416
309
368
835
492
534










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIWE
527
533