<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03662

Description Uncharacterized protein
SequenceMDELGIIEQGVDWRTRLGQDIRDCMINDILFSLQTKLQSTSTTLIDLQKVAARIEERIHTIASDYGDYLRRICLTRGDLDSYDVLLNDCQRQQASIRSSILLHQENKQGVLSNQVALNDHKEHSHPYEKDMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLNIYWFHMDREKFSSFLDKLLLSRVQADAPMDTFELKSFAIDRANCWINHAIKHNAKVLKFAEYGKWEPFYLDPNLVELSSRYLETLELTNVALDATIFSQLANSCPALQNMLLTDCLLEVEEISSSSLKNLDIIDCYILKDLSICTPSLVSLCIKNERTDNSSFRNSYLIFATVIIIDASSVSSMELLAMDRQFTFVEKDGGEPMFKNLRNLSLGLWCINNMFSPLRRFVRHSPMLRMVTLRISPLDWKSHLTKEHQEMLISIRDRRNLFDGMQQGAAGQAGPSGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDERADQERFHGFVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNPLEGQIQSTSLKRLSIINCFISDGFLVDAPNLISLCFFRPLSGKSTEGANHSSDNRSWPFSASVWEFDDDGSDHDDDFFAIASGGEHFDDKRDNESDQDNGSSDEDSDDKRDHESDHDDDVPSSPYSDSKDSCDGNDSECESYESGDKEGDDLEDCYSNDMLENLIKVAKGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIHRGRGDIDPSGGSFACNNLKKVKITCCKDDEMVHMLKQFLQRNGISLEKIVHHTSSTHNGKKDGGGDSSAKRKAQGEVARLAMKQRRARNSNLFDGMHQGAARQAGPSGGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASAPRVDIRHPCACDERADQERFGDFVTTMLLNRRPFAPIKALRLWWSHDGDAETWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISPKIKILKLTTFGMDIKAITHICSRCTSLEELELKDFRRLDGQIRSASLKRLSIINCFISVAFLVDAPNLISLCFIRPLSFERTKESICSSDNRRWPAPVWKDDNDGFDHDDIFAIASGEHFDDKRENESDQDYGFGDGSDDNIASESDHDDDGPPSPYSVSYDGDNECESYEPRDKEESDRTVAYGEIADEYSSNGDPSDEYRGNYVSHDSANYGRANKFGNLKFPVKSIVDASAHEGELLLRRLLENFPMFNNLDTLSLGEWCMVPDFSALSTILTKSPNAKRLYLHLDVIHRRRRSIDPSGGSFSCNNLEKVKITCCKDDVMVHMLAQFLQDNGVSPEKIFVRRTSSLHNGKEGRGSNSSAKRKAQGEVARLAVKQRRARNSELFDGMHQGAAGPRPSGGGGDRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVRYPCACDGRAVDQKRFRDFVTILLLRRRPLAPFKALRLSWSHDEDDVNAWIAHAVRRGAEEIDLSARRHQGYPVPDYKHFISPKIKILKLTHLRTTRFTADNTLDLVCSGCTSLEELELKDIKSLWGGIQSDSLKRLSIINCHVTSDGFLVEAPNLISLCCIRPVRAVPWFSHMVSLVEATVVLDDSRLSDDYQQPVLDDDDDGSDYDDCFFAPKAEGSDDKRDNEADNDSGDKKNRDGSESDLDDHDGEYDHEDGDKEVDDLEGGVDRTVTYGEIADESSSYGIPTPTPSNEYGGNYGNHDYTILGGDHMLDNLSDVRTLGLLGHQGEMLLRRQLENCPIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMDIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIFVRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVKQLRRARNSNPFDGMQQGAAGQAPRRDDGEAAGPSGGGGGGGGGEDRISALPDAVLGRIVSHLKAWQAVRTSVLSKRWRDVWASAPRVDIRHPCACDERADQERFHGFVDTLLLRRRPFAPIKALRLCWTHDGDANNWIAHAVRRGAEEIELSTRHHQGSLEPEPEFTSFISPKIKILKLTRVGMDIRSITQICSRCTSLEELELDDVRLLEGQIQSASLKRLSIIKCYIDDGFLVDAPNLVSLCFIRPLGIERKGGANSSSDRLWWPVWLNDDDGYDHDDDFFTNASAVQSDDKRGSKSDQDDLEGCNDDDRTVAYDEIADEYSSNGGPGDEHGGYSESDDSTICGPYGLFNVLVKTSLIMIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYLHLDMVHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRIFVRRTSRTRRDSRAKQKEQEDHLRLAKKW
Length2522
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.523
Instability index45.71
Isoelectric point5.80
Molecular weight283914.77
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03662
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     241.85|      18|      18|     715|     732|       1
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  715-  732 (33.07/15.49)	SG....GEHFDDKRDNESDQDN
  734-  751 (32.85/15.32)	SS....DEDSDDKRDHESDHDD
 1222- 1239 (31.20/14.11)	AS....GEHFDDKRENESDQDY
 1240- 1257 (27.50/11.38)	GF....GDGSDDNIASESDHDD
 1750- 1764 (25.00/ 9.53)	QP....V..LDDD.DDGSDYDD
 1765- 1786 (23.39/ 8.34)	CFfapkAEGSDDKRDNEADNDS
 2290- 2303 (21.47/ 6.92)	.P....VW.LND..DDGYDHDD
 2309- 2326 (25.89/10.18)	AS....AVQSDDKRGSKSDQDD
 2347- 2364 (21.48/ 6.93)	SS....NGGPGDEHGGYSESDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     128.73|      15|      17|     672|     686|       2
---------------------------------------------------------------------------
  672-  686 (26.24/11.73)	PLSGKSTEGANHSSD
  691-  705 (27.41/12.60)	PFSASVWEFDDDGSD
 1183- 1197 (25.35/11.06)	PLSFERTKESICSSD
 1202- 1214 (24.92/10.75)	P..APVWKDDNDGFD
 2271- 2285 (24.80/10.66)	PLGIERKGGANSSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    3429.88|     429|     508|     375|     881|       3
---------------------------------------------------------------------------
   83-  423 (376.65/203.57)	DVLLNDCQRQ..Q.AS.............IRSSI....LLHQENKQGVlSNQ........vALNDHKEHSHPYEKDMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLN...IYWFHM.DREKFSSFLDKLLLSRvQADAPMDTFELkSFAID.RA.NCWINHAIKHNAKVLKF.AEYGKWEPfylDPNLVELS..SRYLETLELTNVALDATIFSQ.....LANSCPALQNMLLTDC.LLEvEEISSSSLKNLDIIDCYI.LKDLSICTPSLVSLCI......................................knertdnssfrnsylifatviiidassvssmellaMD.....R...............QFtF.......................................................................................................................................................................................................................................................................................................................vekdggepmfknLRNLSLGLwCINN.MFSPL............RRFV.RHSPML.RMVTLRISPLDWK
  424-  924 (862.35/444.46)	SHLTKEHQEM..L.IS.............IRDRR....NLFDGMQQGA.AGQ.........AGPSGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDERA.DQERFHGFVTTMLLRR.RPFAPIKALRL.CWSHDGDA.NNWIAHAVRRGAEEIDFSARHHQDDP...KPELEYTSFISHKIKILKLTRVRMGIKFITQ.....ICYRCTFLEELELKNVNPLE.GQIQSTSLKRLSIINCFI.SDGFLVDAPNLISLCFFRplsgksteganhssdN...............RS..W....................pfsasvwefdddgsdHD.....D...............DF.FAiasggehfddkrdnesdqdngssdedsddkrdhesdhddDV.......................................PSSPYSDSKDSCDGNDSE..................CESYESGDK..EGDD.......LED.......................CY........................SNDM..........................LENLIKV.AKGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDM.IHRGRGDIDPSGGSFACNN............LKKVKITC.CKDDeMVHML............KQFLqRNGISLeKIVHHTSSTHNGK
  932- 1438 (761.49/389.75)	SAKRKAQGEV..ArLA.............MKQRRarnsNLFDGMHQGA.ARQ.........AGPS..GGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASAPRVDIRHPCACDERA.DQERFGDFVTTMLLNR.RPFAPIKALRL.WWSHDGDA.ETWIAHAVRRGAEEIDFSARHHQDDP...KPELEYTSFISPKIKILKLTTFGMDIKAITH.....ICSRCTSLEELELKDFRRLD.GQIRSASLKRLSIINCFI.SVAFLVDAPNLISLCFIRplsfertkesicssdN...............RR..W......................papvwkddndgfdH......D...............DI.FA........................................I.asgehfddkrenesdqdygfgdgsddniasesdhdddgPPSPYSVSYDG....DNE..................CESYEPRDK..EESDrtvaygeIAD.......................EY........................SSNGdpsdeyrgnyvshdsanygrankfgnLKFPVKS.IVDASAHEGELLLRRLLENFPMFNNLDTLSLGEWCMVPDFSALSTILTKSPNAKRLYLHLDV.IHRRRRSIDPSGGSFSCNN............LEKVKITC.CKDV.MVHML............AQFL.....................
 1457- 1985 (673.09/343.60)	.HNGKEGRGS..N.SSakrkaqgevarlaVKQRRarnsELFDGMHQGA.............AGPRPSGGGG....DRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVRYPCACDGRAvDQKRFRDFVTILLLRR.RPLAPFKALRL.SWSHDEDDvNAWIAHAVRRGAEEIDLSARRHQGYP...VP..DYKHFISPKIKILKLTHLR.TTRFTADntldlVCSGCTSLEELELKDIKSLW.GGIQSDSLKRLSIINCHVtSDGFLVEAPNLISLCCIR..............pV...............RAvpW......................fshmvslveatvvLDdsrlsD...............DY............................................qqpvldddddgsdyddcffapkaegsddkrdneadndsgDKKNRDGSESDLDDHDGE..................YD.HEDGDK..EVDD.......LEG.......gvdrtvtygeiadessSYgiptptpsneyggnygnhdytilgGDHM..........................LDNLSDVrTLGLLGHQGEMLLRRQLENCPIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMdIHRSRGGINPTGGSFACNN............LKKVKITC.RKDDvMVHML............AKFLqRNGISL..............
 2013- 2510 (756.30/387.04)	AQDEAARRAVkqL.RR.............ARN.S....NPFDGMQQGA.AGQaprrddgeaAGPSGGGGGGGGGEDRISALPDAVLGRIVSHLKAWQAVRTSVLSKRWRDVWASAPRVDIRHPCACDERA.DQERFHGFVDTLLLRR.RPFAPIKALRL.CWTHDGDA.NNWIAHAVRRGAEEIELSTRHHQGSL...EPEPEFTSFISPKIKILKLTRVGMDIRSITQ.....ICSRCTSLEELELDDVRLLE.GQIQSASLKRLSIIKCYI.DDGFLVDAPNLVSLCFIR................plgierkggansssdRL..W...........................................wpvwlndddgydhddDF.FT.......................................N..........................................................asavqsddkrgsksdqddLEGCNDDDRtvAYDE.......IADeyssnggpgdehggysesddstiCG........................PYGL..........................FNVLVKT.SLIMIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYLHLDM.VHRGRGDIDPSGGSFACNN............LKKVKITC.CEDDvMVHKLaefleanglqrqRIFV.RRTSRT.R....RDSRAKQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.12|      21|     538|    1287|    1316|       4
---------------------------------------------------------------------------
 1287- 1316 (36.80/24.23)	RTVAYGE....iadeyssngDPSDEYRGNYVSHD
 1824- 1857 (36.32/23.79)	RTVTYGEiadesssygiptpTPSNEYGGNYGNHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.69|      10|     538|    1446|    1455|       5
---------------------------------------------------------------------------
 1446- 1455 (19.72/12.22)	EKIFVRRTSS
 1986- 1995 (19.97/12.47)	QKIFVRRTSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03662 with Med15 domain of Kingdom Viridiplantae
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