<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03660

Description Uncharacterized protein
SequenceMVPAGGGGGELERRVMAALKASEARGDQPLVWAVEVARVVAGEGAGLPSADLAGILVSNLCFAHNSPSLWKLVGHAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLRSNVTSSFLSMEAGPNRDKITKSIDDALQLSKIYGFSGIDNGHVIIFFMMFVITKLIDCTLEDCGFPSGLTEEQGSIYAIEGPQDMDLDVKGVSTEKQNEHRAQLRRKNTVMALDVLIMMVADRKIQSFLRLIFLNMVSNTAYQPNNKRLLGVLGNMKYGGSMLGQFTGAGRAACWVIFDIYVENAIDGKHLSAISAIEVLKEMTKTLQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDSRLCMLLALIPLSIGAILKEETDVHGAQGSKSLPKTSGLVSSLQDLIQYSGLLVPPSSVVNAANAAASKAAAFKANYKSGGGNPGMMGQNDSSTKTVGNMLHLIVEACISRNLIDTSSYLWPGYVVSSGHLKDATLPQESPWLNFMQGAPLSGPLIDALIATPASSTTELDRLYHITLNGSEEEKSAAAKILCGASFVCGWNIQEYVVRMVVKLLSPPLPSNSSTQGSMSHYLAQMSTLNALLLGISYGDAIHIISLYGMVPDVAAALMPICEVFGSIPPPSNHKPAIVGEISVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNHIDFANSSASSRNSSNNIGPLNEVPAQPLYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKPVVSSGNLSSTSSSSVSGSSVSTPDDYQRPTVPAWEFLEAVPFVLEAVLTACAHGRFSSRDLTTSLRDLVDFLPASIAAIVSYFLAEITRGIWKMVPMNGTEWPSPGASLHSIEAEIKEILASAGIQIPSCYPRGVPPMLPLPMAALVSLTITFKLDKSSEYIHAISGQALENCAGGSSWPSMPIIAALWTQKVRRWHDFIILSCLRSPFGRDKDAVAQLIQSCFSSFLRSSCSGSDFTANRGVGALMGDAITGQGLQLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWADKLANGFSSSGPPQLKSGRTPLSSAACMAHQVAMLGGGLLCVAGGPLLVQVLYEETLPTLLLSAREESMKDPGPVSSTLQGYAMANMLFFCGSLLWGAERTSPVMKLSFLSRRPRVVGNHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIASGLRSWNEHDLALALLERGGPQAISTGSIVNPKSYRGLARQRIQLELSDLSMYISTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVSPLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWSNLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIATSLTLRNPHIVVGSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCVIHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSSKIYSSLISTASGSMVFDISLDLQVKKIVENNFDKLPLHGRGKDYPPNWWKALGGLLLAHGTIISEYRFVNAVLLINGYNYLKETVHDTFRSISVSPNGYKFLSTADKGDGASLFLQLTAEMIELEGHGGSQCKEEGLNPLGPSESEKISEDELKIYQVLLNVRMQLSQDIGTAPYAICGDQTLRNFAKFRPSTIARLANIDGVNQHFISHYGSIFIQNITQLAKELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAKFCSWELWQKMKFSFQKVAIHLHYRRAVPIKEKTVISYILDAARDGCEMDWSRFCEEVTYEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAPKTTSNGSEVGADVCDASPLTKRGQTDGSLICGDEPASKLQKIDGQGVNSTAAIGATEDAILELVEGRNGVSLEDVVKHFNGSKRECVVEMLDNLEGNFLVYKKNGCYMIM
Length2087
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.030
Instability index43.36
Isoelectric point7.34
Molecular weight227805.01
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03660
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.63|      58|     197|    1741|    1833|       1
---------------------------------------------------------------------------
  894-  954 (96.10/49.51)	AEIKEILASAGIQipsCYPRGVPPMLPLPMAAL.........VSLTITFKLDKS.SEYIHAISG.QALENCA
 1744- 1812 (86.53/101.42)	AEMIELEGHGGSQ...CKEEGLNPLGPSESEKIsedelkiyqVLLNVRMQLSQDiGTAPYAICGdQTLRNFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.92|      22|     893|    1076|    1112|       2
---------------------------------------------------------------------------
   26-   47 (39.65/14.47)	GDQPLVWAVEVARVVAGEGAGL
 1089- 1110 (41.28/20.01)	GRTPLSSAACMAHQVAMLGGGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.37|      56|     892|     594|     651|       3
---------------------------------------------------------------------------
  594-  651 (90.51/78.32)	QMSTLNALLLGISYgDAIHIISLYGMVPDVAAALM...PICeVFGSIPPPS........NHKPAIVGEI
 1443- 1509 (83.86/61.90)	QLHMLRDLLVGVPF.VALTATATQRVRGDIATSLTlrnPHI.VVGSFDRPNlfygvkscNRSMAFINEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.95|      28|     201|     548|     589|       4
---------------------------------------------------------------------------
  562-  589 (47.09/20.23)	IQEYVVRMVVKLLSPPLPS..NSSTQGSMS
  765-  794 (40.86/15.44)	VANKILSMICRKMNKPVVSsgNLSSTSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.70|      35|     892|      97|     149|       6
---------------------------------------------------------------------------
  112-  149 (55.65/68.57)	LLRSNVTSSFLSMEAGPNR...DKITksiDDALQLSKIYGF
 1007- 1044 (59.04/31.21)	FLRSSCSGSDFTANRGVGAlmgDAIT...GQGLQLPMAPGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.27|      30|     472|    1112|    1141|       7
---------------------------------------------------------------------------
 1112- 1141 (52.27/39.06)	CVA..GGPLLVQVLYEET.......LPTL..LLSAREESMK
 1574- 1614 (41.00/28.64)	CVIhyGCPKSLESYYQESgrcgrdgLPSVcwLYYQRSDFMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.70|      35|     152|     350|     391|       9
---------------------------------------------------------------------------
  350-  391 (44.82/50.62)	PLEGPIphLDSrlcmLLAlIPLSIGAILKE..ETDVHGAQGSKS
  509-  545 (54.88/34.74)	PLSGPL..IDA....LIA.TPASSTTELDRlyHITLNGSEEEKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.90|      10|     199|     548|     561|      13
---------------------------------------------------------------------------
  551-  561 (19.60/17.58)	LCGASFvCGWN
 1879- 1888 (22.30/ 6.62)	LGGAKF.CSWE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03660 with Med33 domain of Kingdom Viridiplantae
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