<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03657

Description Uncharacterized protein
SequenceMAVCRNVSFQRNPISKTLVDVASGSANADAVAAAAPRATAPTPAKMDAKVDEMSKAYQELVAAAQAILEARRQPGGENTAAMDAAREAFEQRRKLFAVACDDADALVQSARQSIVSDPGRFVDVVTTPDEDSVRSPTRSSAESSSSSGFGALPDEVLRHILLRLPSAAAAARTSLISRRWRNLWSTLLPKLRFPGVTDLARVGAALRLRVAPVRLLRIESSDRAPDKIVAVLHLAAPLLEGKLCFDVITPAAAAAGAAGTGGAIQIPCFEKATEITIRLRGRLGIQLPPSGVFAKLTALSLSHCRFDDQGQRDLGDAVSSEGCPSLRELRIRDADVVSNLAIRSESLRLVQLSRLEGIRQLTISAPALTELDLYACLLWGMPMVDIFAPALETLHWVDFFSSSSVRFDEKPNVHRLSVYGMVYGRRNTPGSLQLVQHFTEARDVHLSLVYPSIMDMSCELLVQAVKKLPAVEILSLRLLTIGHTFGPCVYHLLKMSTGIRELKLKLEDHIADGEVPCSSGCVCYEPQAWKKNNISLNFLQKVEINNLSGAERQIYFVKRLLRWTMPELKTITLSFDPSVTVSEKVSRKLLSFSTPGICMEIYLHRNGTRFEDRLDCGRVIAVFIATDGSPPVFCLLLSFSTMFTHQSTNML
Length651
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy0.049
Instability index50.53
Isoelectric point8.65
Molecular weight71208.48
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03657
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     218.55|      49|      84|     346|     394|       1
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  205-  251 (44.11/24.92)	ALRL.....RVAPVRLLRIEssdrAPdkIVAVL..HLAAPLLEGKLCFDVIT..PA....
  264-  302 (40.60/22.35)	....IQ.IPCFEKATEITIR................LRGRLGIQLPPSGVFAklTALSLS
  346-  394 (80.51/51.63)	SLRLVQ.LSRLEGIRQLTIS....AP..ALTEL..DLYACLLWGMPMVDIFA..PALETL
  431-  481 (53.32/31.68)	SLQLVQhFTEARDV.HLSLV....YP..SIMDMscELLVQAVKKLPAVEILS..LRLLTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.32|      22|      26|     147|     172|       5
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  149-  172 (31.82/22.88)	FGALPDEVLRHilLRLPSAAAAAR
  180-  201 (39.50/17.40)	WRNLWSTLLPK..LRFPGVTDLAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.80|      16|     303|     305|     324|       6
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  305-  321 (24.61/30.12)	RFDDQGQRDlGDAVS.....SE
  325-  345 (20.20/ 6.69)	SLRELRIRD.ADVVSnlairSE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03657 with Med32 domain of Kingdom Viridiplantae
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