<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03656

Description Uncharacterized protein
SequenceMAAPSAAAAWVDWALEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKAANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSDDVSAFDGTFSEQRIDKIDKLQKMNNVITIELIGHLLHDKVITHILSLARENIKFHPIVTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLIKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISVANQAASKAAMFVSGTNISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVRLVVKLLSSSDPIDFSGGESQLVKHGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIISSTKNRNTQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGTPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWRIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWAHEVDLRVLRRLSAGLRQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1253
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.144
Instability index40.10
Isoelectric point6.64
Molecular weight136363.56
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03656
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.29|      55|      72|     595|     666|       1
---------------------------------------------------------------------------
  605-  666 (85.94/85.86)	LSPSVSWS.....PRTGEEISAHTVFSNAFIlLLRLWKFNHpplEYCVMG..DGAPVGsqlTP.....EYLLLL
  675-  741 (83.35/45.25)	ISSTKNRNtqkqlPVTSNPSSEHPIFMDSFP.KLKLWYRQH...QACLAStlSGFAHG...TPvhknvDSLLNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.02|      24|      45|      14|      37|       2
---------------------------------------------------------------------------
   14-   37 (41.77/21.50)	ALEYTKAAQAESRPPAEWAARVAS
   58-   81 (41.25/21.15)	ALLYGGGGAAWKYAEAALAAGLAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.46|      26|      38|    1081|    1109|       3
---------------------------------------------------------------------------
 1081- 1109 (35.16/30.66)	AASlGATLVWLsGGTALVQ.SLFQEMLpSW
 1121- 1147 (45.30/24.48)	AAS.GGTVYKL.GGHALAYlAVYAGMF.AW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.32|      31|      38|     827|     859|       5
---------------------------------------------------------------------------
  827-  859 (50.60/38.19)	IVSYFSAEVTRGVWKPAFMnGTdWPSP.AANLSM
  867-  898 (47.73/26.90)	IVAATGVDVPRLVTGGSTL.GT.LPLPlAAFVSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     365.55|     118|     237|     216|     343|       7
---------------------------------------------------------------------------
  216-  343 (182.44/150.36)	HDKVITHilSLARENIKFHPIVTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIA.ATNSIEILSGlIKALQAVNRATwHDAFLALWIASlrlvqrEREPIE..GPVPHLDTRVCML.LSITTLAIVD
  456-  577 (183.10/123.11)	HVNSITH..ALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEdKVSAATILCG.ATLLRGWNFQE.HTVRLVVKLLS......SSDPIDfsGGESQLVKHGPMLnVIVTGISPVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.23|      54|     229|     751|     805|       9
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  751-  805 (91.93/57.08)	TSIGSLSGSSSISnSSGPGVDDS.HLWPQLPAWEILEAVPFVVDAALTACSHGRLF
  983- 1037 (93.31/53.82)	TSVCSCGGIASLL.GHGFGSHCSgGLSPVAPGILYLRIFRCIKDCSILAEDILRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.16|      28|     734|     428|     455|      10
---------------------------------------------------------------------------
  428-  455 (54.55/33.66)	MW.HL.IVESCISRNL.LETSVYYWPGYING
 1162- 1192 (39.61/22.34)	MWsHFeFLASALDGKIsLGCDLSLWRAYVSG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03656 with Med33 domain of Kingdom Viridiplantae
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