<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03654

Description Uncharacterized protein
SequenceMAAPSAAAAWVDWALEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKAANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSDDVSAFDGTFSEQRIDKIDKLQKMNNVITIELIGHLLHDKVITHILSLARENMQSQWAAFTNRLQLLITKSSTLQTSTVALEAFQQLNLDVCNIFRENKHWLRRKFHPIVTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLIKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISVANQAASKAAMFVSGTNISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVRLVVKLLSSSDPIDFSGGESQLVKHGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIISSTKNRNTQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGTPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWRIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWAHEVDLRVLRRLSAGLRQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1304
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.123
Instability index40.82
Isoelectric point6.93
Molecular weight142383.39
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03654
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.02|      24|      43|      14|      37|       1
---------------------------------------------------------------------------
   14-   37 (41.77/22.82)	ALEYTKAAQAESRPPAEWAARVAS
   58-   81 (41.25/22.45)	ALLYGGGGAAWKYAEAALAAGLAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.42|      40|      44|     704|     746|       2
---------------------------------------------------------------------------
  704-  746 (57.81/48.74)	PVGSQLTPEYLLLLRNSQvvSIISSTKNrNTQKQLPVTSNPSS
  749-  788 (73.62/50.09)	PIFMDSFPKLKLWYRQHQ..ACLASTLS.GFAHGTPVHKNVDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.46|      26|      37|    1132|    1160|       5
---------------------------------------------------------------------------
 1132- 1160 (35.16/35.73)	AASlGATLVWLsGGTALVQ.SLFQEMLpSW
 1172- 1198 (45.30/28.54)	AAS.GGTVYKL.GGHALAYlAVYAGMF.AW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.12|      18|      42|     463|     480|       8
---------------------------------------------------------------------------
  463-  480 (35.84/26.17)	GYME.NVNDRTTNYSGNM..W
  502-  522 (25.28/16.07)	GYINgHVNSITHALPSQLaaW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.15|      32|      42|     849|     890|       9
---------------------------------------------------------------------------
  849-  880 (55.01/28.12)	ACSHGRLFPRELATGLKDLTDFLPASLATIVS
  894-  920 (45.01/36.90)	AFMNGTDWPSPAA....NLS.MVEEHIKKIVA
  922-  948 (40.14/19.68)	...TGVDVPR.LVTGGSTLGT.LPLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     277.16|      85|     433|     543|     633|      11
---------------------------------------------------------------------------
  543-  633 (137.21/93.39)	PAPSLAEVQKLYEVAVD.GSDEDKVSAATilcgaTLLRGWN...FQEHTVRLVVKL.LSSSDPIDFSGGESQLVKHGpMLNVIVTGISPVD....YVPIF
  978- 1071 (139.94/80.61)	PWPSMPIVAALWTQKVKrWSDFLVFSASR.....TVFHHNNdavFQLLRSCFTATLgMSSTTSVCSCGGIASLLGHG.FGSHCSGGLSPVApgilYLRIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.51|      49|     486|     151|     203|      13
---------------------------------------------------------------------------
  151-  203 (72.11/57.41)	PGLVDAALD.DEGLLELIPdkKAHW.PTRSDDVSAfDGTFSEQRIdKIDKLQKMN
  640-  690 (78.40/46.85)	PELAAALMAiCEVFGSLSP..SVSWsPRTGEEISA.HTVFSNAFI.LLLRLWKFN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03654 with Med33 domain of Kingdom Viridiplantae
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