<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03646

Description Uncharacterized protein
SequenceMASSSSSSSSSLASSSGGGDAASASASASAAAAAGAIVVAVAVRGDGRASRRAARWAAANLAAHGAGAGRVALVHVIPPVSFVPSPSGERVPVEKMDAETVEMYAEDRRARAQEEVFLPLRRLFARTTVETVILEEPSVTAALVRYAADSGVRNLVVGSTSLNWFKRILRLRDVPSTVLKAMPCSCNVFVVSRHRLTIKFANQARTSKSSACVRTQSISHKSFSRIQKNWLLDKQSLHDHPEDGTPKSSGDTSYAGSHTCSSRSTSTNAGKSSGSHGRSLFGSLGRKTPGRDVNTDPDAIGRLKEIPYVALSSIDEDLQSQPVDEVAKLRKELQDTLVMYDKACEDLVHAKKKIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHKAEIVADMVTAEKTKVMDALLSTGKSCRRYSKREIQLATDNFSDAKKIGEGGYGNVYRCTLDHTEVAVKVIQQDSSDKIDEFLREVEILSQLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDQLINNKGQQSLHWFLRIQIIFEVACGLAFLHATKPEPIVHRDLKPGNILLDKNYVSKIGDVGLAKLISDIVPEGLTEYRDTAVAGTLYYMDPEYQLTGTIRPKSDVYALGIIILQLLTGKRPHGLILSAEEAIKKDSISDVLDSSQIDWPIAEAEILAKLAVRCTALKCRDRPSLESEVLPEIESILSRITASPTLRSPNAAVPSHFICPILQEVMDDPYVAADGHTYEHRAIKAWLKKHKTSPVTKQRLQYLSIIPNHSLRVAIQQWKSQSS
Length806
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.242
Instability index53.33
Isoelectric point8.22
Molecular weight88262.62
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03646
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.38|      12|      17|     245|     258|       1
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  245-  258 (18.31/18.57)	TPKSSGDTSyaGSH
  265-  276 (22.07/13.64)	TSTNAGKSS..GSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.51|      16|      31|      21|      36|       2
---------------------------------------------------------------------------
   21-   36 (25.13/12.35)	AASASASASAAAAAGA
   53-   68 (27.38/14.05)	AARWAAANLAAHGAGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.44|      11|      30|      92|     102|       4
---------------------------------------------------------------------------
   92-  102 (19.45/11.67)	PVEKMDAE.TVE
  119-  130 (14.99/ 7.51)	PLRRLFARtTVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.99|      12|      23|     292|     303|       9
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  292-  303 (21.13/15.21)	DVNTDP.DAIGRL
  317-  329 (15.86/ 9.41)	DLQSQPvDEVAKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.17|      22|     189|     482|     503|      10
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  482-  503 (37.83/22.67)	IQQDS......SDKIDEFLREVEILSQL
  666-  693 (32.34/18.46)	IKKDSisdvldSSQIDWPIAEAEILAKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03646 with Med32 domain of Kingdom Viridiplantae
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