<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03644

Description Uncharacterized protein
SequenceMADRLDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGGRRDDVDDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFATQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENYGRRPTSHPALTKQEPPRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
Length532
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.950
Instability index70.26
Isoelectric point5.41
Molecular weight59247.91
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03644
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.52|      19|      19|     139|     157|       1
---------------------------------------------------------------------------
  116-  135 (24.38/12.26)	DSDSDDERlRRAAASNYGHN
  139-  157 (30.30/17.02)	DDEEEEEE.QEAAPAEEDEE
  159-  177 (27.84/15.04)	ELDPEAVE.LEALTNEIDEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.06|      17|      19|     331|     349|       2
---------------------------------------------------------------------------
  333-  349 (32.91/22.45)	NYG...RRPTSHPALTKQEP
  352-  371 (26.14/10.17)	NMGaveKVQSRRPELARQEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.83|      19|      19|     416|     434|       3
---------------------------------------------------------------------------
  397-  415 (27.04/13.99)	QSKP...L.SSDSGP.GRPlRAAP
  416-  434 (32.73/18.36)	QQKP...FVEMKSRL.ARE.QVAV
  435-  456 (22.06/10.15)	ERKPaasHVD.KSRLpAQP.SAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      16|      18|     457|     474|       5
---------------------------------------------------------------------------
  459-  474 (27.61/20.08)	ESAKPKI...YDGLESNSR
  476-  494 (21.26/ 7.61)	EAAKRRLqerYQEAENAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.75|      12|      20|      81|      97|       6
---------------------------------------------------------------------------
   81-   97 (14.76/19.56)	GSVRRvpekqSKVDSSS
  104-  115 (22.99/13.29)	GGGRR.....DDVDDDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      24.53|       8|      23|      21|      33|       7
---------------------------------------------------------------------------
   21-   33 ( 8.92/18.41)	ICDvienaILVAA
   47-   54 (15.61/10.32)	ICE.....ILFTA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03644 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGGRRDDVDDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEI
2) SEFFDEMDEDGNLRHNNDGSLGNKRENYGRRPTSHPALTKQEPPRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
3) VALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFF
59
307
263
174
532
297










Molecular Recognition Features






MoRF SequenceStartStop




1) KPFVEMKSRLAR
2) LESAKPKIYD
3) PLRAA
4) RNHIRSWANGRR
5) VKQQAMLHKQSKPL
418
458
410
521
388
429
467
414
532
401