<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03644

Description Uncharacterized protein
SequenceMADRLDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGGRRDDVDDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFATQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENYGRRPTSHPALTKQEPPRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
Length532
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.950
Instability index70.26
Isoelectric point5.41
Molecular weight59247.91
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03644
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.52|      19|      19|     139|     157|       1
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  116-  135 (24.38/12.26)	DSDSDDERlRRAAASNYGHN
  139-  157 (30.30/17.02)	DDEEEEEE.QEAAPAEEDEE
  159-  177 (27.84/15.04)	ELDPEAVE.LEALTNEIDEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.06|      17|      19|     331|     349|       2
---------------------------------------------------------------------------
  333-  349 (32.91/22.45)	NYG...RRPTSHPALTKQEP
  352-  371 (26.14/10.17)	NMGaveKVQSRRPELARQEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.83|      19|      19|     416|     434|       3
---------------------------------------------------------------------------
  397-  415 (27.04/13.99)	QSKP...L.SSDSGP.GRPlRAAP
  416-  434 (32.73/18.36)	QQKP...FVEMKSRL.ARE.QVAV
  435-  456 (22.06/10.15)	ERKPaasHVD.KSRLpAQP.SAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      16|      18|     457|     474|       5
---------------------------------------------------------------------------
  459-  474 (27.61/20.08)	ESAKPKI...YDGLESNSR
  476-  494 (21.26/ 7.61)	EAAKRRLqerYQEAENAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.75|      12|      20|      81|      97|       6
---------------------------------------------------------------------------
   81-   97 (14.76/19.56)	GSVRRvpekqSKVDSSS
  104-  115 (22.99/13.29)	GGGRR.....DDVDDDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      24.53|       8|      23|      21|      33|       7
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   21-   33 ( 8.92/18.41)	ICDvienaILVAA
   47-   54 (15.61/10.32)	ICE.....ILFTA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03644 with Med26 domain of Kingdom Viridiplantae
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