<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03641

Description Uncharacterized protein
SequenceMAAATAAAAAELERRVMAAVKASAARGDPPLLQAAEAARCAREASSSISVDGGAGAALAAALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLALALLTPRVVPNRQAQPEAYRLYLELLGQYTVAPVCTESVETKAMLVKSIDDALHLSDSYGFQRVDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGHDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFGTAHNLLGSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPPAVVQSANIAARKALVALSVLKDRNERGHNYSKDISSIKAAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDASAVEESPWSALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVCSEISLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFQKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSGIPPVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKSVMLNGTDWPSPAATLLAVESDIEEALASAGVHINISPRTRPPIPMLPLPIATLISLSITVKMEEFNHLQGIIDKGVEICATSSSWPSMAIIGAFWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAHQERSPRFSLSPGLLYTRCCRMFPDNYFVCEEILKVVIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGMKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSVYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVRVAGSQEHAGILGSPFDISLVSTGCSAPLPFPPPPPPPA
Length1341
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.183
Instability index49.13
Isoelectric point7.95
Molecular weight145840.56
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03641
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.34|      16|      17|      41|      56|       1
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   25-   40 (25.08/12.35)	ARGDP..PLLQAAEAARC
   41-   56 (23.68/11.25)	AREAS..SSISVDGGAGA
   57-   74 (20.58/ 8.80)	ALAAAlvSNLCFAHNTGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.47|      71|     390|     848|     954|       4
---------------------------------------------------------------------------
  875-  954 (107.74/122.40)	GLrnLADFLPASVAVIVSYFSAEITRGLWK....SVMLNGTDWPSP.............AATLLAVESDIeeALASAGVHiniSPRTRPPIPmlPLP
 1253- 1340 (117.73/61.89)	GL..LVDFAPTWIPEVKLETLKKLASGLWKwhecDLALSLLERGGPkaistvrvagsqeHAGILGSPFDI..SLVSTGCS...APLPFPPPP..PPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.94|      16|      26|     676|     692|       5
---------------------------------------------------------------------------
  676-  692 (26.44/20.90)	HRNcSFEEA.SVYSVFSC
  704-  720 (28.50/16.31)	HRP.PVEYAlSKHGVFVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.24|      25|     397|     252|     276|       6
---------------------------------------------------------------------------
  252-  276 (42.75/26.55)	YRNTPENFNILLQRLQLIGALKSKN
  651-  675 (44.50/27.95)	YGLVPELAAILMPLCEIFGSLPSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.72|      49|     397|     369|     458|       8
---------------------------------------------------------------------------
  387-  435 (85.26/82.53)	IQRDRGIP...EGPFPHLHSRLCMLLAIVPLSIASILKEESDKI..EGGMVSVR
 1100- 1153 (70.46/22.18)	IERARALAnecDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLchAGGMKLVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.00|      18|      24|     529|     548|      10
---------------------------------------------------------------------------
  529-  548 (28.81/25.57)	KDASAVeeSPWSALMEGSPL
  552-  569 (30.19/19.40)	KDALMV..TPASSLAELEKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.59|      17|      24|      81|      99|      11
---------------------------------------------------------------------------
   81-   97 (26.46/17.53)	QAMASRLVSP...LLALALL
  100-  119 (24.13/ 8.31)	RVVPNRQAQPeayRLYLELL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03641 with Med33 domain of Kingdom Viridiplantae
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