<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p> Detailed information on MDP03641
Description
Uncharacterized protein Sequence MAAATAAAAAELERRVMAAVKASAARGDPPLLQAAEAARCAREASSSISVDGGAGAALAAALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLALALLTPRVVPNRQAQPEAYRLYLELLGQYTVAPVCTESVETKAMLVKSIDDALHLSDSYGFQRVDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGHDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFGTAHNLLGSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPPAVVQSANIAARKALVALSVLKDRNERGHNYSKDISSIKAAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDASAVEESPWSALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVCSEISLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFQKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSGIPPVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKSVMLNGTDWPSPAATLLAVESDIEEALASAGVHINISPRTRPPIPMLPLPIATLISLSITVKMEEFNHLQGIIDKGVEICATSSSWPSMAIIGAFWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAHQERSPRFSLSPGLLYTRCCRMFPDNYFVCEEILKVVIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGMKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSVYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVRVAGSQEHAGILGSPFDISLVSTGCSAPLPFPPPPPPPA Length 1341 Position Tail Organism Oryza nivara (Indian wild rice) (Oryza sativa f. spontanea) Kingdom Viridiplantae Lineage Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity 0.07 Grand average of hydropathy 0.183 Instability index 49.13 Isoelectric point 7.95 Molecular weight 145840.56 Publications
Function
Annotated function
GO - Cellular Component mediator complex GO:0016592 IEA:InterPro
GO - Biological Function GO - Biological Process regulation of phenylpropanoid metabolic process GO:2000762 IEA:InterPro
Interaction
Repeat regions
Repeats
>MDP03641
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 69.34| 16| 17| 41| 56| 1
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25- 40 (25.08/12.35) ARGDP..PLLQAAEAARC
41- 56 (23.68/11.25) AREAS..SSISVDGGAGA
57- 74 (20.58/ 8.80) ALAAAlvSNLCFAHNTGA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 225.47| 71| 390| 848| 954| 4
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875- 954 (107.74/122.40) GLrnLADFLPASVAVIVSYFSAEITRGLWK....SVMLNGTDWPSP.............AATLLAVESDIeeALASAGVHiniSPRTRPPIPmlPLP
1253- 1340 (117.73/61.89) GL..LVDFAPTWIPEVKLETLKKLASGLWKwhecDLALSLLERGGPkaistvrvagsqeHAGILGSPFDI..SLVSTGCS...APLPFPPPP..PPP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.94| 16| 26| 676| 692| 5
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676- 692 (26.44/20.90) HRNcSFEEA.SVYSVFSC
704- 720 (28.50/16.31) HRP.PVEYAlSKHGVFVC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 87.24| 25| 397| 252| 276| 6
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252- 276 (42.75/26.55) YRNTPENFNILLQRLQLIGALKSKN
651- 675 (44.50/27.95) YGLVPELAAILMPLCEIFGSLPSSD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 155.72| 49| 397| 369| 458| 8
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387- 435 (85.26/82.53) IQRDRGIP...EGPFPHLHSRLCMLLAIVPLSIASILKEESDKI..EGGMVSVR
1100- 1153 (70.46/22.18) IERARALAnecDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLchAGGMKLVR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.00| 18| 24| 529| 548| 10
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529- 548 (28.81/25.57) KDASAVeeSPWSALMEGSPL
552- 569 (30.19/19.40) KDALMV..TPASSLAELEKL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.59| 17| 24| 81| 99| 11
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81- 97 (26.46/17.53) QAMASRLVSP...LLALALL
100- 119 (24.13/ 8.31) RVVPNRQAQPeayRLYLELL
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Explaination for Stockholm format
The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column. #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.
Alignment of MDP03641 with Med33 domain of Kingdom Viridiplantae
Intrinsically Disordered Regions
IDR Sequence Start Stop
NA NA NA