<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03640

Description Uncharacterized protein
SequenceMAAATAAAAAELERRVMAAVKASAARGDPPLLQAAEAARCAREASSSISVDGGAGAALAAALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLALALLTPRVVPNRQAQPEAYRLYLELLGQYTVAPVCTESVETKAMLVKSIDDALHLSDSYGFQRVDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGHDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFGTAHNLLGSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRMRKLECSFNDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPPAVVQSANIAARKALVALSVLKDRNERGHNYSKDISSIKAAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDASAVEESPWSALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVCSEISLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFQKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSGIPPVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKSVMLNGTDWPSPAATLLAVESDIEEALASAGVHINISPRTRPPIPMLPLPIATLISLSITVKMEEFNHLQGIIDKGVEICATSSSWPSMAIIGAFWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAHQERSPRFSLSPGLLYTRCCRMFPDNYFVCEEILKVVIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGMKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSVYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVLTTRRRNEVKWY
Length1323
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.163
Instability index48.39
Isoelectric point8.36
Molecular weight144706.36
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03640
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     230.33|      74|      90|     359|     433|       1
---------------------------------------------------------------------------
  359-  433 (121.67/70.71)	ELAKTLQVLNR.....ATWQETFQALWISALRLIQRMRKLEcSFNDRGIP.EGPFPHLHSRLCMLLAIVPLSIASILKEES
  447-  526 (108.66/58.38)	ELLSSLQVLGQffgllSPPPAVVQSANIAARKALVALSVLK.DRNERGHNySKDISSIKAAGNMLHLIVEACIARNLVDTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.19|      45|      83|     749|     794|       2
---------------------------------------------------------------------------
  749-  794 (78.03/59.94)	SPYDVSRKSIFQLDPSFQKPvYIDSFPKLRAWYFQNQ....ACIASTLSS
  830-  878 (73.16/51.14)	SSSSMSGSSLGTQDDVSQGP.PATAWEVLEAVPFVLEtvlaACAHGRLSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.94|      16|      25|     685|     701|       3
---------------------------------------------------------------------------
  685-  701 (26.44/22.03)	HRNcSFEEA.SVYSVFSC
  713-  729 (28.50/17.26)	HRP.PVEYAlSKHGVFVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.63|      28|     373|     884|     913|       4
---------------------------------------------------------------------------
  884-  913 (43.55/33.01)	GLrnLADFLPASVAVIVSYFSAEITRGLWK
 1262- 1289 (50.07/31.40)	GL..LVDFAPTWIPEVKLETLKKLASGLWK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.00|      18|      20|     538|     557|       5
---------------------------------------------------------------------------
  538-  557 (28.81/21.82)	KDASAVeeSPWSALMEGSPL
  561-  578 (30.19/16.55)	KDALMV..TPASSLAELEKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.34|      16|      17|      41|      56|       6
---------------------------------------------------------------------------
   25-   40 (25.08/14.62)	ARGDP..PLLQAAEAARC
   41-   56 (23.68/13.34)	AREAS..SSISVDGGAGA
   57-   74 (20.58/10.51)	ALAAAlvSNLCFAHNTGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.17|      14|      16|     226|     241|       9
---------------------------------------------------------------------------
  226-  239 (22.90/19.36)	KNTIMTLEVVEKIT
  242-  255 (24.27/12.40)	KNTQVFLRLVYRNT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03640 with Med33 domain of Kingdom Viridiplantae
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