<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03633

Description Uncharacterized protein
SequenceMAYGGRKSGSSGYAIWASIDGTCAIPGVSLSSRHPATTAPIRSTALIRIEIEAEGEAVKHAADLLGEMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINDSRAQKRKALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGVTQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAEVLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAGGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYLSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVFFLCEWATCDYRDCRTSLLRNVKFTGRRDLSQVHLAVSILKNKMDEINNLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHRRILKQLPGSSLFEILEEDRITEEQHLYEMMSTYSSERRLVLSELSTGQAFDANSRGEYASSSCVPKASDLFLASGGDKHGRVPEQVEDVKALVSSMLRFINPHSVEEEHCQIKTNPQGSSASTVTQIDTVDVKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQNSRGRAKVVRKTQSLAQLASSRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQVCQIGEALVFSSLLRYENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKMNVRNSRIVPNMKDIIQRQTEEKKGITAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVASAVSAIVLNAGHTIAKHLDLSAGNYHGVSSMGSSLSSIRHILHVHISSLCLLKDALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNDLSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWASLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPSFDSEAAEGLQSALDHLEMPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKGNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2189
PositionKinase
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.242
Instability index50.81
Isoelectric point8.58
Molecular weight241157.47
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03633
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     996.54|     335|     378|     777|    1145|       1
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  777- 1145 (486.34/371.30)	ERRLvLSELSTGQAFDansrGEYASSSCVPKASDLflasggDKHGRVPEQVEDVKaLVSSMLRFINPHSveEEHCQIkTNPQGSSASTVT..QIdTVDVKHDCEDCARTK.RQKLDER....ASPLQ......GFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQNSRGRAK..VVRKTQSLAQLASSrIEGSqGASTSHLCESKVGCSHHKPSIDVDNVKDvDHMKivDLSEVGKSLKRLRLLERRSVSS.DDKTLLKWRLGDEELLSILYILDiccdlvsGARFLvWLLTKVRGgmATSGQTGRSAT.HIKNRENQVCQIGEALVFSSLLRYENilLATDLLPE..VLSAS.MSRNFVLATARQPASGAFA...YTRYFLKKyRDV
 1160- 1517 (510.20/300.66)	DQRL.LAELDNGRSVD....GDLVSSSGVSAGEEI......DEQIRQKMNVRNSR.IVPNMKDIIQRQT..EEKKGI.TAPKSPSVDREDsyQI.AHDIVLGLLECIRQNgGASLDGDpsivASAVSaivlnaGHTIAKHLDLSAGNYHGVSSMGSSLSSIRHILHVHISSLCLLKdaLGDRFSRVFEIALA.VEAS.SAITATFAPPKMQRNQFQPSPETHDVYG.NHTN..DLSNTGKGFVGRTTKVAAAISAlVVGSVIHGVVNIERMVAVLKIKD.......GLDIL.HLLRGLRS..STNGVSRSTGTfKMENSVEVLVHWFRILLGNCRTVYDG..LIADILGEsyVLALSrLQRMLPLSMVLPPAYSIFAmvlWKRYTFSR.EDV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.70|      36|      75|       4|      40|       2
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    4-   40 (60.27/45.27)	GGRKSGSSGYAIwASIDGT.CAIPGVSLSSRHPATTAP
   82-  118 (61.44/39.74)	GGGGAGGGGRDS.SRLDGSpYSANNYPLSSRRQQQLAP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.21|      50|     155|    1861|    1912|       5
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 1861- 1912 (82.38/59.53)	KAIARNGTKQSGLVPS.GTEAASNKSSSRKGIRggSPNIGRRAPVGNDPT.PPS
 2019- 2070 (78.83/49.99)	KSVSKSTTRTPRDFPSfDSEAAEGLQSALDHLE..MPGIIRRRIQAAMPVlPPS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.97|      26|     376|     252|     278|      14
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  252-  278 (41.42/30.45)	KVTYLNQPQVRSTsVSTSAGGSDNHRS
  634-  659 (42.56/26.45)	KGSSLNNTSLAAT.VSDSSGLRNNAKS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03633 with Med12 domain of Kingdom Viridiplantae
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