<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03629

Description Uncharacterized protein
SequenceMEGATAAHPASSSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSAQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVKNNQQNVGMSCQPMTPPQCQVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKLTEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVHKGMQNIFPIFQQYLGQLRLSISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLPGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVASPHVTSPGAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCASVKSTVSLDVDSVTEFLQHRVVAPTVANGGSSNQAIHTLVSAVPPKAAHQADDQVQNGAEEMEAKKPFSRLIETLLSSSPEALRHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLVDTVMNIADENGTDEIIYQNGGGMLIKLSYNSMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISYAVAVAFGRAVDELLEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRAG
Length980
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.540
Instability index62.08
Isoelectric point8.75
Molecular weight107306.90
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03629
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     184.88|      21|      22|     584|     604|       1
---------------------------------------------------------------------------
  488-  506 (27.49/12.92)	PTPQQES....HG.C.HLPGVPSSC
  526-  550 (26.41/12.09)	PSPVTQTvqpiQVASPHVTSPGAYG
  551-  573 (23.20/ 9.59)	KSSVPKP.svaRVVSHS.ASIKSRL
  574-  597 (29.02/14.11)	ASSPSRP.egaHAASPNITSVESTL
  598-  620 (30.96/15.62)	PTPIAKP.gtvRAASP.CTPVKSTS
  621-  643 (22.27/ 8.86)	QSQLSKP.avtEVDSCR.ACVTSKL
  644-  665 (25.53/11.40)	KSPVGKP.etaGAASP.CASVKST.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.76|      29|      29|     228|     256|       2
---------------------------------------------------------------------------
  228-  256 (51.31/27.59)	QQRQLVETPEQHQLLRMKQQH.MRGNQQQN
  259-  287 (41.48/20.86)	QRNQILPAQQAH.LGKMQIGHpAVKNNQQN
  291-  316 (39.97/19.84)	SCQPM..TPPQCQVATAQQSS.LGCDSPQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.90|      55|      76|      48|     123|       3
---------------------------------------------------------------------------
   48-  113 (86.90/69.79)	DHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNMEMKVRrsqslqagttPSaQRPSSQQQN
  126-  180 (99.00/60.73)	DQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVH..........PS.QQPQSQQHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.05|      22|      22|     744|     765|       4
---------------------------------------------------------------------------
  744-  765 (39.13/24.35)	RHSSNSMRLAIWEADRIPAPSP
  769-  790 (37.92/23.37)	RPRNGKMKRDFDHVTSRPISSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.64|      18|     193|     199|     220|       5
---------------------------------------------------------------------------
  199-  219 (30.35/25.50)	LNQIQGQSvsgQNFQQN.HV..LG
  431-  451 (25.29/ 8.57)	VAKIGCQS...QNCSENsHIvnLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.67|      41|     137|     666|     743|       7
---------------------------------------------------------------------------
  699-  743 (59.61/80.63)	LVSAVPPKAAHQADDQV..QNGAeEMEAKKPFSRLietLLSSSPEAL
  840-  882 (65.06/24.09)	LVDTVMNIADENGTDEIiyQNGG.GMLIKLSYNSM...SLSPSLKSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03629 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HRVVAPTVANGGSSNQAIHTLVSAVPPKAAHQADDQVQNGAEEMEA
2) KVRRSQSLQAGTTPSAQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQ
3) PAPSPLPYRPRNGKMKRDFDHVTSRPISSPL
4) PVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVKNNQQNVGMSCQPMTPPQC
5) TCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLP
6) TQTVQPIQVASPHVTSPGAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKP
679
89
761
163
458
530
724
143
791
300
500
627










Molecular Recognition Features






MoRF SequenceStartStop




1) PLPYRPR
765
771