<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03620

Description Uncharacterized protein
SequenceMDAAALGAAAGAPNPAAPVGGDQQPRTERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNTRIDMIGSACETAEKVIAESRKNYGLGARQGANLGPTLDKAQAAKIQEQEGLLRAADCVYRETKGRCVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHAQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANNAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQFNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
Length468
PositionHead
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.698
Instability index50.70
Isoelectric point9.78
Molecular weight50881.66
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03620
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     194.67|      25|      26|     289|     313|       2
---------------------------------------------------------------------------
  289-  313 (45.85/14.07)	QLQDLQGQSQQKLQVPGQQQMQYN.Q
  318-  340 (38.50/10.72)	QYQNRQMQA.GRMQ.PGMSQSQLN.Q
  387-  408 (35.75/ 9.47)	Q...MQGLNQYSLTGGHPQRSHPS.Q
  413-  437 (36.34/ 9.73)	QMFGMGGANSTSM.MGMQQQQQFNmQ
  446-  467 (38.23/10.60)	GMTGLQNQTQNP.NFP..QQRQQN.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.54|      11|      29|     187|     197|       7
---------------------------------------------------------------------------
  187-  197 (21.88/11.14)	PNVVNAQGNPM
  218-  228 (22.66/11.78)	PNFENVSTPPM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03620 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHAQQQLRPSAAGMLAQSAIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANNAMFTAAQASSNSQMMANIPGSMQSQSLLPQMQGLNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQFNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
196
468










Molecular Recognition Features






MoRF SequenceStartStop




NANANA