<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03619

Description Uncharacterized protein
SequenceMAAPPTPTPSPSPSPSLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDGIAERLYTALVVLPPPPPAARAPVPAVAAAEAATRADRRLLLPDAARGVPSLCSSDRAEAVVTDDDDGAAAAVAPRGDCHDSVAAEAFRVKAALSNAQEKTEAELLELLRALQQLEFTVDAIRVTEIGTAVKPLRKHGSKQIRQLVRSLIDGWKAVVNDWVNNGGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAAFFATPCTSIQLSEVLLCASDIRTNGEESAQQHYPANQEPAKKQLPMGQRYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSAAAHGPWTPQKMHLEPKFSEMRPKQQQDTSVAQRRPKPTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNDTKSSTSALIETYYFLNLDSRVTDVVNSTRIAAKKQRTIQVVDPQDLPKQRNRNLQPSCKPRNSSSNSLRNRLGIRR
Length492
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.633
Instability index58.54
Isoelectric point8.43
Molecular weight53970.96
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03619
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.59|      10|      16|     301|     311|       1
---------------------------------------------------------------------------
  301-  311 (17.30/13.79)	YDPeQNWKLDQ
  320-  329 (21.30/12.05)	YEP.SNWQKKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.87|      29|      49|      27|      75|       2
---------------------------------------------------------------------------
   11-   51 (40.34/42.62)	PSPSPsldywrgffsgARASIfDAIDAAIRVAAADH....PDALR
   69-  102 (45.53/14.86)	PPPPP..........aARAPV.PAVAAAEAATRADRrlllPDAAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.73|      12|      36|     331|     342|       5
---------------------------------------------------------------------------
  331-  342 (20.70/10.94)	SVTGARQRPSAA
  370-  381 (22.03/12.12)	SVAQRRPKPTMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.80|      13|      16|     406|     418|       8
---------------------------------------------------------------------------
  406-  418 (23.81/19.40)	LQEGYQEFNNDTK
  424-  436 (22.98/18.48)	LIETYYFLNLDSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03619 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKKQRTIQVVDPQDLPKQRNRNLQPSCKPRNSSSNSLRNRLGIRR
2) DIRTNGEESAQQHYPANQEPAKKQLPMGQRYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSAAAHGPWTPQKMHLEPKFSEMRPKQQQDTSVAQRRPKPTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNDT
448
271
492
417










Molecular Recognition Features






MoRF SequenceStartStop




1) YWRGFF
19
24