<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03618

Description Uncharacterized protein
SequenceMAVASARSSLPSSSSSPLPPLSPQPVVPTGVERMLVRAGGGTRSLREIDEEEDDDDDDGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCRAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAIVHQQAKPYCQILYICKEALACTREASQFADKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPRRSNSISHPFPFSRQLENGVENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLHIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEAWGVLQAMVNYPDNKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTHYELIPNNALRFAIQEWQMKQQL
Length858
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.530
Instability index47.28
Isoelectric point6.46
Molecular weight96188.30
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03618
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.65|      21|      28|     256|     283|       1
---------------------------------------------------------------------------
  241-  256 (14.43/ 8.79)	.....GSslSDKSEFPPR..SVS
  261-  281 (38.09/17.24)	YSGFLGS..PDQQSLPRRSNSIS
  286-  305 (29.14/10.50)	FSRQLEN..GVENISPIRPNSV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.30|      27|      28|     360|     387|       2
---------------------------------------------------------------------------
  360-  386 (47.79/34.45)	EMFEQWQQVR...NELERSRKEASEGR...................QKA
  389-  436 (26.58/15.00)	ELFEASKMFRareNSLCK.EKIAVEERltrekvslekehlhiynelQKA
  452-  477 (34.92/21.67)	SLMEELQTVQ...GELQRQKDNAVKEA...................EK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.55|      11|      29|     309|     319|       3
---------------------------------------------------------------------------
  309-  319 (22.36/12.08)	PKGCSPNSSHQ
  339-  349 (19.19/ 9.39)	PVSSSSSEEHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.01|      27|      30|     503|     531|       4
---------------------------------------------------------------------------
  503-  531 (44.00/36.05)	IkeATNDFDESKMIGHGGCGSVYK..GFLRH
  534-  562 (41.01/26.85)	V..AIKKFNREGITGEKEFDDEVEilGRMRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.65|      18|      18|     121|     138|       6
---------------------------------------------------------------------------
  121-  138 (29.86/22.75)	EKELRAYRKIEKDDMNKL
  140-  157 (31.79/24.74)	EQYLSYCRAFPKVQAEKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03618 with Med32 domain of Kingdom Viridiplantae
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