<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03617

Description Uncharacterized protein
SequenceMVSTGSAAESRQGGRQQEESPTQRRIPKRRRRGEANKAMATAGSPSPYPGDSPEPSFSGEKVYVAVGEESSRGTLLWALHKFPQGTAFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICVQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLSEIWCVSNTWLHKLNLEPHIETTSSDRYSDKEKEDTKERGESDNELQHIPMQLERVRQEAYEEKCRREKAEQELFEALQKVSENLYFGELKQKNEIEVKLATTMEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPHRDLLPNHALRSAIQEWLQSNAD
Length766
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.449
Instability index49.87
Isoelectric point6.05
Molecular weight85969.43
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03617
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.03|      54|     349|     290|     413|       1
---------------------------------------------------------------------------
  355-  413 (77.22/148.21)	IIKDLMLQRDKAVREAEAIRvkngESTAIADRTIPITELSISEiKEATSNFDHSSKVGE
  706-  759 (96.81/42.19)	VMRDPLIAADGFTYEAEAIR....EWFDSGHYTSPMTNLDLPH.RDLLPNHALRSAIQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.69|      43|     349|      62|     139|       2
---------------------------------------------------------------------------
   62-  105 (70.78/56.09)	VYVAVGEESSRGTLLwALHKF.PQGTAFV........LLHVYSPPNFLPILGA
  415-  466 (59.91/11.79)	VYGSVYKGLLRQTNV.AVKKLnPESTESLsqfsheveILSRVRHPNLVTLIGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.03|      27|     349|     290|     325|       3
---------------------------------------------------------------------------
  125-  156 (35.79/20.15)	LQRISDNLdqY..QLicvQQKVQAE.KLVVESDDV
  292-  321 (36.25/43.39)	LQKVSENL..YfgEL...KQKNEIEvKLATTMEEV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03617 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ETTSSDRYSDKEKEDTKERGESDNELQHIPMQL
2) MVSTGSAAESRQGGRQQEESPTQRRIPKRRRRGEANKAMATAGSPSPYPGDSPEPSFSGEKVY
235
1
267
63










Molecular Recognition Features






MoRF SequenceStartStop




1) QQEESPTQRRIPKRRRRGEANKAMAT
16
41