<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03616

Description Uncharacterized protein
SequenceMVSTGSAAESRQGGRQQEESPTQRRIPKRRRRGEANKAMATAGSPSPYPGDSPEPSFSGEKVYVAVGEESSRGTLLWALHKFPQGTAFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICVQQKVQAEKLVVESDDVAYGLVDVISEHNVSMLVMGAADDKHYTKKAAPFGHDVMQDCRQSATSAQCSVERSSSLSEIWCVSNTWLHKLNLEPHIETTSSDRYSDKEKEDTKERGESDNELQHIPMQLERVRQEAYEEKCRREKAEQELFEALQKVSENLYFGELKQKNEIEVKLATTMEEVDRLARTADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDFGNVPSYFICPIQQDVMRDPLIAADGFTYEAEAIREWFDSGHYTSPMTNLDLPHPKPPGEQEFCESNVQGKRRMRAKCRITIQLHYIADRPGRYIQDFTANLPKRGQEKMDEEEIHIAVGKNFRKEKANILWAAARFPRATIVLVHVHWPSKWMPFMGGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYLSHDDVLAGVVNLIKKLKIKRIIIGSSNEHLEHTGSIGYGGSAESLASVHELSDDSNGYTTPPSDFADEIMYDDGVIQMDGADELATETETEDEESIETGELNSYEEEGEHSSGETAHRTDEIQSFRSITERAEELMEEIDKLQRKLKELQEEDDRSILSPRQKAAAASLKKEKRLSTGRYPELQLPQHISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLSNSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAVHVKPLQDQADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAEWRSLDIMLRMANSPSKSRKWTSISIHAT
Length1384
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.451
Instability index48.34
Isoelectric point6.34
Molecular weight155156.62
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03616
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1133.16|     336|     688|     233|     688|       1
---------------------------------------------------------------------------
  280-  678 (552.47/598.60)	RREKAEQELFEALQKVSENLYFGELKQKNEiEVklattMEEVDRLARTADELaakfQEqcekilvlekrsahsdriikdlmlqrdkavreaeairvkngestaiaDRTIPITELSISEIKEATSNFDHSSKVGESVYGSVYKGLLRQTNVAVKKLNPESTESLSQFSHEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLAckdNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRM.....LTDEfkaTTTLYRHTHPKGTFVYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAGDWPLMHAEQLSRVGLRCCEIRRKNRPDLQTEV.WTVLEPMLRSASSM
  997- 1370 (580.69/415.01)	YEEEGEHSSGETAHRTDEIQSFRSITERAE.EL.....MEEIDKLQRKLKEL....QE...............eddrsilsprqkaaaaslkkekrlstgrypelQLPQHISRFSMSMISKATGNFCSGNLIGEGGYGPVYKGKLGGVAVAIKLLRPHGRQGFPEYKQEVVVLSRMEHPHIVRLMGVCPESCGLVYEHLPNGTLLDTLS...NSKSLSWKDRVRILGEQRSALAYLHSCRPHAIIHADLKLTNILLDAANSSRLGDFGTARAvhvkpLQDQ...ADTICRRTNPMGTTGYMDPVFFVTGELTAESDVYAFGVVVLQVLTGLLDLNIADQVREALKMDAVHSVLDASAGSWPEVQAEKLLRLALRCCSLERKRRPAITCDAeWRSLDIMLRMANSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     396.53|     118|     742|      60|     180|       2
---------------------------------------------------------------------------
   60-  180 (194.22/157.67)	EKVYVAVGEE..SSRGTLLWALHKFPQGTaFVLLHVYSPPNFLPILGAKIPAGQLREQELIAHKKMNLQRISDNLDQYQLICVQQKVQAEKLvvESDDVAYGLVDVISEHNVSMLVMGAADDK
  803-  922 (202.31/153.17)	EEIHIAVGKNfrKEKANILWAAARFPRAT.IVLVHVHWPSKWMPFMGGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYL..SHDDVLAGVVNLIKKLKIKRIIIGSSNEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.51|      20|     348|     355|     374|       4
---------------------------------------------------------------------------
  355-  374 (32.78/19.57)	IIKDLMLQRDKAVREAEAIR
  706-  725 (34.73/21.14)	VMRDPLIAADGFTYEAEAIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.47|      17|      18|     930|     947|       5
---------------------------------------------------------------------------
  930-  947 (24.86/20.67)	GYGGSAESLASvHELSDD
  950-  966 (32.61/22.40)	GYTTPPSDFAD.EIMYDD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03616 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ETTSSDRYSDKEKEDTKERGESDNELQHIPMQL
2) IQMDGADELATETETEDEESIETGELNSYEEEGEHSSGETAHRTDEIQSFRSITER
3) MVSTGSAAESRQGGRQQEESPTQRRIPKRRRRGEANKAMATAGSPSPYPGDSPEPSFSGEKVY
4) SAESLASVHELSDDSNGYTTPPSDFADEIMYD
235
969
1
934
267
1024
63
965










Molecular Recognition Features






MoRF SequenceStartStop




1) RQQEESPTQRRIPKRRRRGEANKAMAT
15
41