<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03615

Description Uncharacterized protein
SequenceMEAAAGAGGAIGGSGREAAAEEEDGGEQWLEEEAEAEAVYCAVGKEAVKEWKANLMWVLAAFPWRRRRSRIVLIHVHRPPSRVNMMGAWVPVSQLAEEEVNAYRQLEEERISKVLDDLLDICKSQKVNASKIIFSCDDIARGLLQLVDDHGITDLVMGAASDKAYSRKMRAPRSKKARKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTSTSPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILAQTREVDARAAELELQITSSERMMRDLEAKLSESYDLLHQLRRERRRDDVPAEAMAGSEAGDQRLTFLRLGLPELEEATNHFDESVRIGGGEGSRGSVYRGDLRSMAVAVKMIGRDVAVDEVGFCREVEAVGRARHPNLVTLVGACPEARAVVHEFVPGGSLEDRLAGAAPALPWHELCGVAHRACSALAFLHSTQPRATVHGDVRPANILLGEECCSSKLAGLGMRRLVRSSGGVALSRPAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAREAAGGSKAWHEVFDASSGGWPLEVAREVALVGLKCCDVEEEPAGARRPGELLEEACGVLEAAMSAAPGRSWSSVSSSSDGGEGGAPSYFVCPILKEVMRDPQIAGDGFSYEAEAIREWLRSGRDTSPMTNLKLPRRELVPNHPLRDAIHHWRLRRAMRTNFTTGLDSYYY
Length866
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.482
Instability index58.38
Isoelectric point5.49
Molecular weight94931.41
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03615
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     313.53|      90|     119|     475|     587|       1
---------------------------------------------------------------------------
  475-  572 (143.83/94.02)	LTFLRLGLPeleEATNHFD.ESVRIGGGEGSRGSVYRG.DLRSMAVAVKMIGRDVAVDEVGFCREVEAV......GRARHPNLVTlvGACPEARAVvheFVPGGSL
  599-  679 (126.89/85.69)	LAFLHSTQP...RATVHGDvRPANILLGEECCSSKLAGlGMRRL...VRSSG.GVALSR.......PAV......GYVDPRHLAT..GEMTPERDV...YALGVVL
  776-  823 (42.82/13.47)	..........................GGEGGAPSYF.......VCPILKEVMRDPQIAGDGFSYEAEAIrewlrsGRDTSP.........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     314.77|      59|      69|     206|     264|       2
---------------------------------------------------------------------------
  161-  195 (31.15/11.61)	.....................SDkaYSRKMRAPR.....SKKARKVQLKASP...SC..KIWFVCK
  206-  264 (92.21/48.26)	EGLNR..TGSSTTSTSPRSSTSD..YSRSRSSPRV.HSLSSEQFGMQDPAEPTTSSV..DQTPIRE
  273-  331 (68.69/34.15)	EGFNHeaVAVASSSTVPVSENVE..AVQRSAAAVV.QSL..QEIEEDSPTPSGHGSE..DAGDVSD
  358-  415 (62.86/30.65)	QKVER..DLADATRIANEAESSQ..QREARHRKEVeERLARERAAMEQDRRELDDIL..AQT..RE
  418-  473 (59.86/28.85)	ARAAE..LELQITSSERMMRDLE..AKLSESYDLL.HQLRRERRRDDVPAEAMAGSEagDQ.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.89|      26|     160|     573|     598|       3
---------------------------------------------------------------------------
  573-  598 (50.61/28.80)	EDR.LAGA.APALPWHELCGVAH........RACSA
  694-  725 (26.37/11.39)	EAReAAGG.SKA..WHEVFDASSggwplevaREV.A
  735-  761 (38.91/20.40)	EEE.PAGArRPGELLEEACGVLE........AAMSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.71|      14|      73|      20|      33|       6
---------------------------------------------------------------------------
   20-   33 (26.42/16.41)	AEEEDGGEQWLEEE
   96-  109 (24.29/14.46)	AEEEVNAYRQLEEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03615 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NEGLNRTGSSTTSTSPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILAQT
205
413










Molecular Recognition Features






MoRF SequenceStartStop




NANANA