<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03612

Description Uncharacterized protein
SequenceMQLRLHIPPSVDLCPFPQTARAHQVRSATLLNPRSEQAHRTTPVAGDGSGASAMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHPARSSIADLFTLYLGMNSKQRVEDPTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSPIKGAEFSSPGQLGLTARGDQSRRGAEISYLHHLSCRIILAGLESDLKPATHAVIFQHMVNWLVNWDQRPHGVDQADALQLQTLRLERPLHEWMHLCLDVIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTSLDERAMGMFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAIVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIHLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAARLLLVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLFGLVNNVIPPLSCKSKSNPSDAAGSTARTTYNKPYTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGVEPVGANRPNTTASGINASNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLVQNPS
Length1673
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.082
Instability index47.17
Isoelectric point6.99
Molecular weight187404.57
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03612
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.14|      16|      80|    1320|    1335|       1
---------------------------------------------------------------------------
 1322- 1337 (26.84/15.51)	TSSAGGISNSDGQRAF
 1404- 1419 (27.30/15.91)	TSSGGGVEPVGANRPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      15|      17|      38|      53|       2
---------------------------------------------------------------------------
   38-   53 (22.69/18.51)	AH.RTTPVAGDGSgASA
   57-   72 (23.66/13.34)	AHgQRQPMSPAIS.ASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.28|      56|     183|     914|     969|       3
---------------------------------------------------------------------------
  914-  969 (96.52/53.14)	FTETLNRITIISLAITMKTRGIAEVEHIIHL..QPLLEQ.IMATSQHTWSEKTLRYFPP
 1100- 1158 (90.76/49.56)	WTHELLPLDILLLALIDRDDDPYALRLVINLleRPELQQrIKAFCTSRSPEHWLKNQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.49|      23|     183|    1435|    1464|       4
---------------------------------------------------------------------------
 1440- 1464 (35.70/35.34)	QLSVLMIqaCGLLLAQLPPEFHTLL
 1627- 1649 (39.79/18.61)	KLEILTL..CGKVMEILRPDVQHLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.43|      23|     183|     102|     146|       5
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   15-   37 (41.44/16.97)	PFPQTARAHQVRSATL...LNPRSEQ
  113-  138 (35.99/37.04)	PTRETSNKLQKRVTAMnrdLPPRDEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.50|      25|     182|     343|     399|       6
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  344-  368 (46.51/79.46)	HGVDQADALQLQTLRLERPLHEWMH
  474-  498 (46.99/12.60)	HGEDLANSIPKGGLDWERALRCLRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      16|      18|     623|     638|       8
---------------------------------------------------------------------------
  623-  638 (26.29/21.88)	SSDPRKVETTRKIISF
  644-  659 (27.34/23.18)	SLDPNNISPQSILLDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.22|      27|     392|     665|     692|      10
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  665-  692 (42.37/26.49)	TLRIWSFNTSIREHLNSDqLQKGKQIDE
 1060- 1086 (46.85/25.32)	TANIYTMVDVLLHHIQLE.LQRGHQIQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     105.91|      22|      22|     243|     264|      11
---------------------------------------------------------------------------
  201-  218 (20.97/ 8.88)	....P..SLLNVVSSVEVPMGQGV
  222-  240 (17.66/ 6.15)	T.GGPaTSSSSAIAVPNAPS....
  243-  264 (38.49/23.32)	P.SNP.TSPLSAMNTIGSPTQSGI
  267-  288 (28.78/15.31)	PiGAN.VSPIKGAE.FSSPGQLGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.09|      15|      16|    1264|    1278|      12
---------------------------------------------------------------------------
 1264- 1278 (28.13/19.48)	FAQYLASSNSSICPP
 1282- 1296 (26.97/18.32)	FANLLFGLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.83|      10|      16|     718|     727|      15
---------------------------------------------------------------------------
  718-  727 (20.12/12.15)	MFWVLSFTMA
  735-  744 (19.71/11.74)	MNWFTSVGVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.49|      13|      18|    1215|    1232|      18
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 1215- 1230 (16.44/19.13)	YstFLAFHPLRFtFVR
 1235- 1247 (25.05/ 8.47)	Y..FYGHLPSKL.IVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.23|      22|     183|     794|     831|      19
---------------------------------------------------------------------------
  794-  815 (36.94/40.76)	GQNVPSIAIVE..TYVRLLLITPH
  834-  857 (32.29/ 8.04)	SKSGVSLLLLEilNYRLLPLYRYH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.35|      14|      23|    1549|    1568|      21
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 1549- 1562 (24.25/30.57)	LRIAFRILGPLLPR
 1574- 1587 (23.11/ 8.79)	LALLFNVLGDVFGK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03612 with Med23 domain of Kingdom Viridiplantae
Unable to open file!