<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03610

Description Uncharacterized protein
SequenceMDSDGEEYDAMWSARCSVSSSAGSLQDAGDQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQNLATDGANIVVAHVHSPAQTLSKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKDMKTDCQKVLIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEEMKEPNSKIALKLMETASPSCKIWFTCNGHLICTREPNENLLAIYVPPAQSNTVPLSMCSISSQMSSIELKNEAPSSEEYTLRSLAQSAMSDWDYIFGDWGRTGYGSLRTDDAISIPEATTLAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEKSYLQEVNQRKETERTLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERLDSSKETKRRRKAESEMLSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTETKAHEEKLAESIRFIQKIQAKYDKTLHERDTAIAESEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHVCQLLRKYNTGNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGCKQAFEALSDDTQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSVPLKSQSPSIGVHLLYYLRSQKVDAHERNRILTCARGRRRGGECWRRAGPGGVDVTATDARSGSDSARAAAKASGGLRQQRRSPHRLRPRRLAAKGDAAARCARLRPPRATALTGRVEPERQLGRQQAKSRRASVDAGGGRRAGGLLSPELHSRLLSDHRAPLLSLLRRRDDELRTKIKYHLLALGWSGRQQAESRRESVDAGGGRRAGGLLSPELHSRLLSDHRAPLLSLLRRWDDELRTKIKYHLLALGWTIASKPNLPGLTPRLRYVSLAGSMHACIAIHKHIYMVLN
Length1278
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.591
Instability index59.22
Isoelectric point7.42
Molecular weight144509.64
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03610
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     318.02|      62|      63|    1112|    1174|       1
---------------------------------------------------------------------------
 1048- 1107 (70.22/39.58)	RSGSDSARAAAKASGGlrqqRRSPHRLRP....RRLaakGDAAARCARLRPPRATALTGRVEPE.....
 1112- 1173 (123.49/78.46)	RQQAKSRRASVDAGGG....RRAGGLLSPELHSRLL...SDHRAPLLSLLRRRDDELRTKIKYHLLALG
 1177- 1238 (124.30/81.76)	RQQAESRRESVDAGGG....RRAGGLLSPELHSRLL...SDHRAPLLSLLRRWDDELRTKIKYHLLALG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     293.59|      45|      97|     357|     401|       2
---------------------------------------------------------------------------
  357-  401 (72.63/45.88)	ESSKRRKAEMDLLIALQ..............RVQESEKSYLQEVNQR..KET.ERTLARQRL
  402-  455 (24.64/10.48)	EIDEMKRRHNTLYDELQdtkkqkllleqhisEIKSAAKDYVQEITEYfiQEScE........
  456-  500 (68.30/42.69)	EAKKFQKIKMDLLAMLQ..............RVKDVENLNRNEKMQR..KDM.EEKIARQRM
  503-  529 (41.40/22.85)	EETKRQRDE..LYHELK..............DVKEQK...................LCLERL
  534-  577 (59.93/36.51)	ETKRRRKAESEMLSALK..............KVHDLEHQYLNELKRR..EAV.EETFARQK.
  579-  605 (26.68/11.99)	...............................EIQET.KRELNKIRSR..HMT.ETKAHEEKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     348.63|     118|     131|      60|     190|       4
---------------------------------------------------------------------------
   60-  190 (167.61/160.05)	LWALQN...LAT..DGANIVVAHVhSPAQTlskvHCTRMKPEEISEYL..MLAKEEAEKNlDEYALiaKSTGKDMKTDCQKVLIDMDDVAKG...LEELITLHGITRLvmGAAADQHYSEE..MKEPNSKIALKLmetASPSC
  192-  321 (181.02/130.62)	IWFTCNghlICTrePNENLLAIYV.PPAQS....NTVPLSMCSISSQMssIELKNEAPSS.EEYTL..RSLAQSAMSDWDYIFGDWGRTGYGslrTDDAISIPEATTL..AAIVDDTNKQRsvMHSPQESDSVNF...SSPAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     196.82|      61|     179|     717|     788|       6
---------------------------------------------------------------------------
  718-  788 (90.09/98.06)	RH.PNvmmLIGacpEAFGMVYEFLPNGSleDQLSCKKNTPPLTWKMRTRIIgEICSALTFIHSQkPHPVVHG
  907-  968 (106.72/71.78)	RHrPD...LTG...EVWGVIKPLLKDAS..QNFGCKQAFEALSDDTQAPSY.FICPILQEVMTD.PHIAADG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03610 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARLRPPRATALTGRVEPERQLGRQQAKSRRASVDAGGGRRAG
2) IVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDIL
3) WRRAGPGGVDVTATDARSGSDSARAAAKASGGLRQQRRSPHRLRPRRLAA
1090
294
1032
1131
340
1081










Molecular Recognition Features






MoRF SequenceStartStop




1) EEYDA
2) LRPRRLAAK
6
1074
10
1082