<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03610

Description Uncharacterized protein
SequenceMDSDGEEYDAMWSARCSVSSSAGSLQDAGDQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQNLATDGANIVVAHVHSPAQTLSKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKDMKTDCQKVLIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEEMKEPNSKIALKLMETASPSCKIWFTCNGHLICTREPNENLLAIYVPPAQSNTVPLSMCSISSQMSSIELKNEAPSSEEYTLRSLAQSAMSDWDYIFGDWGRTGYGSLRTDDAISIPEATTLAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEKSYLQEVNQRKETERTLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERLDSSKETKRRRKAESEMLSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTETKAHEEKLAESIRFIQKIQAKYDKTLHERDTAIAESEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHVCQLLRKYNTGNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGCKQAFEALSDDTQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSVPLKSQSPSIGVHLLYYLRSQKVDAHERNRILTCARGRRRGGECWRRAGPGGVDVTATDARSGSDSARAAAKASGGLRQQRRSPHRLRPRRLAAKGDAAARCARLRPPRATALTGRVEPERQLGRQQAKSRRASVDAGGGRRAGGLLSPELHSRLLSDHRAPLLSLLRRRDDELRTKIKYHLLALGWSGRQQAESRRESVDAGGGRRAGGLLSPELHSRLLSDHRAPLLSLLRRWDDELRTKIKYHLLALGWTIASKPNLPGLTPRLRYVSLAGSMHACIAIHKHIYMVLN
Length1278
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.591
Instability index59.22
Isoelectric point7.42
Molecular weight144509.64
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03610
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     318.02|      62|      63|    1112|    1174|       1
---------------------------------------------------------------------------
 1048- 1107 (70.22/39.58)	RSGSDSARAAAKASGGlrqqRRSPHRLRP....RRLaakGDAAARCARLRPPRATALTGRVEPE.....
 1112- 1173 (123.49/78.46)	RQQAKSRRASVDAGGG....RRAGGLLSPELHSRLL...SDHRAPLLSLLRRRDDELRTKIKYHLLALG
 1177- 1238 (124.30/81.76)	RQQAESRRESVDAGGG....RRAGGLLSPELHSRLL...SDHRAPLLSLLRRWDDELRTKIKYHLLALG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     293.59|      45|      97|     357|     401|       2
---------------------------------------------------------------------------
  357-  401 (72.63/45.88)	ESSKRRKAEMDLLIALQ..............RVQESEKSYLQEVNQR..KET.ERTLARQRL
  402-  455 (24.64/10.48)	EIDEMKRRHNTLYDELQdtkkqkllleqhisEIKSAAKDYVQEITEYfiQEScE........
  456-  500 (68.30/42.69)	EAKKFQKIKMDLLAMLQ..............RVKDVENLNRNEKMQR..KDM.EEKIARQRM
  503-  529 (41.40/22.85)	EETKRQRDE..LYHELK..............DVKEQK...................LCLERL
  534-  577 (59.93/36.51)	ETKRRRKAESEMLSALK..............KVHDLEHQYLNELKRR..EAV.EETFARQK.
  579-  605 (26.68/11.99)	...............................EIQET.KRELNKIRSR..HMT.ETKAHEEKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     348.63|     118|     131|      60|     190|       4
---------------------------------------------------------------------------
   60-  190 (167.61/160.05)	LWALQN...LAT..DGANIVVAHVhSPAQTlskvHCTRMKPEEISEYL..MLAKEEAEKNlDEYALiaKSTGKDMKTDCQKVLIDMDDVAKG...LEELITLHGITRLvmGAAADQHYSEE..MKEPNSKIALKLmetASPSC
  192-  321 (181.02/130.62)	IWFTCNghlICTrePNENLLAIYV.PPAQS....NTVPLSMCSISSQMssIELKNEAPSS.EEYTL..RSLAQSAMSDWDYIFGDWGRTGYGslrTDDAISIPEATTL..AAIVDDTNKQRsvMHSPQESDSVNF...SSPAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     196.82|      61|     179|     717|     788|       6
---------------------------------------------------------------------------
  718-  788 (90.09/98.06)	RH.PNvmmLIGacpEAFGMVYEFLPNGSleDQLSCKKNTPPLTWKMRTRIIgEICSALTFIHSQkPHPVVHG
  907-  968 (106.72/71.78)	RHrPD...LTG...EVWGVIKPLLKDAS..QNFGCKQAFEALSDDTQAPSY.FICPILQEVMTD.PHIAADG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03610 with Med32 domain of Kingdom Viridiplantae
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