<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03609

Description Uncharacterized protein
SequenceMDGVGLGVHRRWDTSGSGSQYSFRTSVSSVAEISTEVGVEVSPPPAAAAAAAADKVFVAVAADVKYGKSALQWALQNLAKDGAKVVIAHVHCPAQMIPMMGAKVHYTKMNTKQVNDYRNKEREKAEEKLDEYLLICRKLKVSCEKLIIEEDDIAKGLTDLVALHGVTKLVMGAAADKHYSRKMNTPKSKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAIPPSPAHTVASTLSSSSISSRMRSMSLHPSESEASSSSGSPRHNLNRSRTEVAKYPSQGSGTAPSQLFGHSDQDVNDQPTRTAMGSIDSWDEFERSQNSCYDSSRNSDTVRVSGSAMQQPMYEPDDDHFVSPRKLENSGDDADIYGRLQEALSETQDLKRETYEESTKRRNAERNLISALQKASHFASKVKELENLYQKEVMHRKITEEALEKQIQETEETERHCNALYDKLHDVEEQKLMVEQHITEMEAVLKEREDRLHDVEEQKFTVEQRITEMQAVLKEHKDKLHDVEEQKLMVEHRITEIRSVLKEREEKLAESKYLLQVLQADKEKLQQERDAAVSESQDLRLKNKQRISMPGEDLNTEFSSYELEQATRGFDQELKIGEGGFGSVYKGTLRNTTVAIKLLHPHSMQGQSEFDQEIAVLSRVRHPNLVTLIGSCREAFGLVYEFLPKGSLEDRLACLNNTPPLTWQVRTRIIYEMCSALSFLHSNKPHPIVHGDLKPANILLDANFVSKLGDFGICRLLIQTNTGAAAAATTRLYRTTTPKGTFAYMDPEFLTTGELTPRSDVYSLGIIILRLLTGKPPQKIAEVVEDAIESGGLHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLATDVWKVVEPLMKAASLTAGRPSFVARPDDSPPPSYFVCPIFQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLTLEHRELIPNRALRSAILEWQQQRQRHQQQEEDDDCT
Length978
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.561
Instability index50.65
Isoelectric point5.82
Molecular weight109543.34
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03609
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     215.39|      39|      54|     454|     492|       1
---------------------------------------------------------------------------
  413-  453 (39.28/25.46)	.KVKELENlyQKEVMHRKITEeaLEKQIQETEE.TERHCNAL.Y
  454-  492 (70.31/51.90)	DKLHDVEE..QKLMVEQHITE..MEAVLKERED.RLHDVEEQKF
  493-  515 (34.95/21.76)	T.............VEQRITE..MQAVLKEHKD.KLHDV.....
  516-  545 (45.13/30.44)	......EE..QKLMVEHRITE..IRSVLKEREE.KL...AESKY
  548-  575 (25.72/13.90)	QVLQ.ADK..EKL..QQ...E..RDAAVSESQDlRLKN......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.27|      32|      72|      76|     111|       2
---------------------------------------------------------------------------
   76-  111 (45.87/47.30)	QNLAKdGAKVVIAhVHCPAQMIpmMGAKV..HYT.KMNT
  151-  185 (47.40/30.33)	DDIAK.GLTDLVA.LHGVTKLV..MGAAAdkHYSrKMNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.06|      10|      22|     292|     301|       3
---------------------------------------------------------------------------
  292-  301 (18.70/12.89)	FGHSDQDVND
  317-  326 (19.36/13.63)	FERSQNSCYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.45|      23|      52|     580|     617|       4
---------------------------------------------------------------------------
  580-  617 (31.92/53.25)	SMPGEdlnTEFssyeleqatrgfDQELK.............IG..EGGFGSVY
  635-  672 (30.53/17.70)	SMQGQ...SEF............DQEIAvlsrvrhpnlvtlIGscREAFGLVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.16|      38|      51|     796|     839|       6
---------------------------------------------------------------------------
  796-  839 (58.18/49.63)	LGIIILRLLTGKPPQ...KIAEVVEDAIESGGLhsildpSAGSWPFV
  847-  887 (61.98/38.80)	LGLRCAEMSRRRRPDlatDVWKVVEPLMKAASL......TAGRPSFV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03609 with Med32 domain of Kingdom Viridiplantae
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