<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03601

Description Uncharacterized protein
SequenceMASNMQPSGPPQQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPPVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPREREDLFESYLMELQKKERTRAAEEHKRHIAEYRAFLESCEFIKTSTQWRKVQERLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMTTSWTLEDFETAVTEDDTLKGITNINMKLIFDDQVERLREKEVKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKALFEDSQEYKALDSETYSRELFEECVVHLKERLKEKERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
Length948
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-1.265
Instability index55.35
Isoelectric point6.05
Molecular weight108888.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03601
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      91.20|      16|      18|      24|      39|       2
---------------------------------------------------------------------------
    4-   26 (19.64/ 6.88)	NMQPsgP.PQQSRpPM.mgssvPPQ
   27-   47 (29.26/13.75)	NLGP..PMPMQFR.PV.ihqqqPPQ
   48-   65 (21.60/ 8.28)	FMQP....GQQFR.PV..gqamPGA
  116-  136 (20.70/ 7.64)	NV.P..PVQPGHQ.PMsssatmPSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.02|      38|      38|     145|     182|       3
---------------------------------------------------------------------------
  145-  182 (72.40/43.38)	DWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERAD
  186-  223 (68.35/40.52)	EWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAE
  231-  256 (32.28/15.06)	DQETETTAGAPSGPTSNSVEPSS..VPA..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.76|      30|      32|     829|     860|       4
---------------------------------------------------------------------------
  846-  876 (40.15/18.03)	DAVDADSHGSKDKKRekdKEK.KHKRRHH.....DTA
  877-  906 (35.44/10.61)	DDVSSERDEKDDSKK..sRRHSSDRKKSR....KHT.
  907-  936 (38.16/12.19)	HASDSDS....ENRH...KRHKKDRDSSRrngtRDDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     165.61|      23|      23|     426|     448|       5
---------------------------------------------------------------------------
  341-  363 (24.55/11.06)	QNGA...SAEELEEAKKTM...AVPGKIN
  404-  425 (21.79/ 8.94)	WDQA...MRVIIND.KRYG...ALKTLGE
  426-  448 (36.70/20.42)	RKQA...FNEYLNQRKKLE...AEERRIK
  449-  474 (18.77/ 6.61)	QRKArddFLAMLEESKELT...SSTRWSK
  494-  516 (18.38/ 6.31)	REDL...FESYLMELQKKErtrAAE...E
  517-  535 (24.42/10.96)	HKRH...IAEY...RAFLE...SCE.FIK
  561-  582 (21.01/ 8.34)	RLEI...FQEYIRDLEKEE...EEHKRI.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.32|      15|      45|     544|     558|       7
---------------------------------------------------------------------------
  544-  558 (26.66/14.90)	QERLEDDERCSRLEK
  590-  604 (26.66/14.90)	QERKNRDEFRKMLEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.90|      21|      40|     276|     297|       8
---------------------------------------------------------------------------
  276-  297 (35.97/24.57)	SVPPGAGPSH.NMENTSSSSnTA
  317-  338 (32.93/17.56)	SVASDAGISRaNNEYPSLAS.TA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.35|      23|      58|     641|     663|       9
---------------------------------------------------------------------------
  641-  660 (29.56/17.22)	.....MPKDLFEDVMEEL.EKQYQ.....DD
  701-  721 (24.12/12.60)	N..MKL...IFDDQVERLrEKEVK.....EA
  722-  749 (18.67/ 7.96)	KkrQRLGEN.FSDLLYSI..KEISasstwDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03601 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
2) MASNMQPSGPPQQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPPVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQS
3) WTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYAN
788
1
209
948
166
381










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYN
195
201