<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03600

Description Uncharacterized protein
SequenceMTLTHTYPAPSHGPRQERGVCIGNPLVWDPNPTPPALCPTRRPHPLFALNPNPAPHRPRRRRVETAPPHLSLSLSSRYWSLAPRRRAATVISQGGRRGRVPCRPRPAPPEPAPPSRSPSAEALLPPRIEGGLLLSGGSSPVVETASSSSSVLLEVARIRTWIDFLPRVICNLLGHRRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPPVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPREREDLFESYLMELQKKERTRAAEEHKRHIAEYRAFLESCEFIKTSTQWRKVQERLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMTTSWTLEDFETAVTEDDTLKGITNINMKLIFDDQVERLREKEVKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKALFEDSQEYKALDSETYSRELFEECVVHLKERLKEKERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
Length1110
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-1.137
Instability index59.12
Isoelectric point7.66
Molecular weight126632.87
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03600
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.01|      39|      39|     305|     343|       1
---------------------------------------------------------------------------
  270-  328 (57.05/27.58)	SWGTaPGQNVPPVQPGhqpmsssatmpsinssetsSSDWQEHTSADGKKYYYNKKTRQS
  329-  369 (66.38/33.28)	SWEK.PAELMTPLERA.................daSTEWKEFTTQEGRKYYYNKVTKQS
  370-  414 (53.58/25.46)	KWTI.PDELKIARELA.............ekasnpRPDQETETTAGAPSGPTSNSVEPS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     151.32|      39|      39|     983|    1021|       2
---------------------------------------------------------------------------
  668-  698 (32.24/14.78)	.......QKKER.....TRAAE...EHKRHiAEY.R..AF....LESCEF..IKT
  983- 1012 (43.44/22.96)	.........KER.....DKEKE...REKDK.GKD.R..SR....KDEMDIDAVDA
 1013- 1054 (49.68/27.51)	DSHGSKDKKREK.....DKEKKhkrRHHDT.ADDvS..SE....RDEKD.DSKKS
 1055- 1099 (25.95/10.19)	RRHSSDRKKSRKhthasDSDSE..nRHKRH.KKD.RdsSRrngtRDDLE......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     254.29|      38|      39|     182|     219|       3
---------------------------------------------------------------------------
   15-   67 (30.54/10.87)	RQErgvcIGNP.................LvwdPNPTPPALcPTRRPhPLFaLNPNpAPHRP......rrrrVETAP
   68-   97 (32.21/11.88)	PH.....LSLS.................L...SSRYWSLA.PRRRA.ATV.ISQG.GR.R................
  101-  140 (35.82/14.07)	.........PC.................R...P...RPAP.PEPAP.PSR.SPSA.EALLPpriegglllsGGSSP
  141-  186 (34.34/13.17)	VVE....TASSsssvllevarirtwidfL...PRVICNLL.GHRRP.P.M.M...................GSSVP
  187-  225 (68.69/34.01)	PQN....LGPP.................M...PMQFRPVI.HQQQP.PQF.MQPG.QQFRP.........vGQAMP
  226-  264 (52.68/24.30)	GAN....IG...................M...PGQM.P...HFQQP.TQH.LPHS.GQVPP....asqayqPSSVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.84|      16|      74|     873|     888|       4
---------------------------------------------------------------------------
  873-  888 (25.81/13.80)	ERLREKEVKEAKKRQR
  951-  964 (19.43/ 8.22)	.RLREEE.KARKEKER
  968-  982 (19.60/ 8.38)	ERRKEKEKKEKERKE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.07|      38|      56|     435|     472|       5
---------------------------------------------------------------------------
  415-  436 (33.36/16.97)	.SVPA..........NQSST..TIM..GAPST...............L..DAAA
  437-  474 (72.70/45.99)	NSVPPGAGPSH.NMENTSSSSNTAMQNGGPST...............VVTPVIS
  478-  529 (42.01/23.35)	PSVASDAGISRaNNEYPSLASTADTQNGASAEeleeakktmavpgkiNVTPV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     266.52|      53|      65|     546|     598|       6
---------------------------------------------------------------------------
  546-  596 (72.43/46.65)	.......................EAKNAFK.................ALL.ES...............................................S....NVESDWTWDQAMRVIINDKRYGALKT..LGE.RKQAFNEYL
  597-  664 (73.66/47.57)	NQ.......rkkleaeerrikqrKARDDFL.................AMLeES...............................................K....ELTSSTRWSKAITMFEDDERFSAVER..PRE.REDLFESYL
  699-  731 (39.36/21.67)	.............................................................................................................STQWRKVQERLEDDERCSRLEK..I.D.RLEIFQEYI
  732-  812 (54.19/32.88)	RDlekeeeehkrihkeqvrrqerKNRDEFR.................KML.EE...............................................HvaegMLTAKTRWRDYCAQVKDSSVYLAVASniSGSmPKDLFEDVM
  813-  937 (26.88/12.25)	EE...........lekqyqddkaRIKEAVKsgkipmttswtledfetAVT.EDdtlkgitninmklifddqverlrekevkeakkrqrlgenfsdllysiK....EISASSTWDDSKALFEDSQEYKALDS..ETY.SRELFEE..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03600 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AATVISQGGRRGRVPCRPRPAPPEPAPPSRSPSAEALLPPRIEG
2) ERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
3) HRRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPPVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQS
4) NPTPPALCPTRRPHPLFALNPNPAPHRPRRRRVETAP
5) WTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYAN
87
950
175
31
371
130
1110
328
67
543










Molecular Recognition Features






MoRF SequenceStartStop




NANANA