<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03597

Description Uncharacterized protein
SequenceMTSFRLSTPPMDVAALFLPQSIAEQHDTQVNNKALRIKDIIMNYKEKAIYLTIYLLEDTLFDDDFVLPTPPMNVGVFFLPQFTAKKYVSENKHGLGTKPKQAQHHAIAITEQHPIAIVRKPLPDHVSLERQSNNIRRLQGIEKRNNTDIADLRLEATKRKLNDAYQEAENRVLLPSHADQYHLGGGAGSGMERWREMFRGADIYDVIRNAILIAGADSPRELLRRRQGIIEWLFAVAPVTVPVPAPLACGRVVDGAGNRLPPAAIPDGGGHHHDDNDGNFAAAEAQTSLIDQQILEALYDEIEEDTQVINEVLRIKDILINYKEQSVDTLFDGLRRLQLMRLSISVLKSTQIAEAVAPLNKHRSPVICKIARDLAKGWKGVAADWVGASSANADTSPDISNPSTVEDDFGLPTPPMDVGAFFLPQSAAEQYVSEFLHKADDDDDESLIPNAKNDCGFGGYKMEIAKPVANMDENILRKGQDLSRQHGPPMRQANLQMKLVDPNVNTIPKIHGLPTKQTPPLRQTNLQLGKTQGPRLHIKPASRFSVVTTKPNKPTHSQYTSRSQFSEETQNKYGLGTKPKQAQHHAIAITEQRPIAVVRKPLPDHKLERQATILEGCKVGIGKRNNTNIADLRLEATKRKLNDAYQEAENKKRKRCVQYVDMHNVIPNLQQRKATTTSMKERRNRPNDRFSVSRSRK
Length697
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.584
Instability index50.38
Isoelectric point9.11
Molecular weight78038.89
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03597
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     539.55|     104|     477|      68|     171|       1
---------------------------------------------------------------------------
    8-   35 (20.87/ 6.46)	.TPPMDVAALFLPQ............................SIAEQHDTQV......NNKAL......................................................................................
   68-  171 (196.69/125.05)	PTPPMNVGVFFLPQFTAKKYVSENKHGL..GTKPKQAQHHAIAITEQHPIAI......VRKPLPD.HVSLERQSNNI................................RRLQ....GIEKRNNTDIADLRLEATKRKLNDAYQEAENR
  235-  363 (90.51/53.43)	AVAPVTVPV..PAPLACGRVVDGAGNRLppAAIPDGGGHHHDDNDGNFAAAE......AQTSLID.QQILEALYDEIeedtqvinevlrikdilinykeqsvdtlfdglRRLQlmrlSISVLKSTQIAEAVAPLNKHR...........
  412-  499 (104.36/62.77)	PTPPMDVGAFFLPQSAAEQYVSEFLH......KADDDDDESLIPNAKNDCGFggykmeIAKPVANmDENILRKGQDL................................SRQH....GPPMRQAN..LQMKL.................
  571-  651 (127.10/78.11)	.......................NKYGL..GTKPKQAQHHAIAITEQRPIAV......VRKPLPD.H.KLERQATIL................................EGCK...vGIGKRNNTNIADLRLEATKRKLNDAYQEAENK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.84|      19|     276|      36|      62|       2
---------------------------------------------------------------------------
   36-   62 (30.07/37.57)	RIKDIIMNYKEKAIyltiylleDTLFD
  314-  332 (36.77/24.59)	RIKDILINYKEQSV........DTLFD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03597 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CVQYVDMHNVIPNLQQRKATTTSMKERRNRPNDRFSVSRSRK
2) VANMDENILRKGQDLSRQHGPPMRQANLQMKLVDPNVNTIPKIHGLPTKQTPPLRQTNLQLGKTQGPRLHIKPASRFSVVTTKPNKPTHSQYTSRSQFSEETQNKYGLGTKPKQAQHHAIAITEQRPIAVVRKPLPDHKLERQA
656
468
697
611










Molecular Recognition Features






MoRF SequenceStartStop




NANANA