<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03591

Description Uncharacterized protein
SequenceMAILERPQSSSGIEHQGQMGNQTRLPTTVMQEQPQPQQQPHLMSDNHHQTHGGWQSNVARVQMITGVGEVNWREEMFQKISVLKNSFFSELTDFDRLLHNCQKTEEQLQSLPKKQADQYRRIAKLKDAVRSALDLLQLQKSSIDEGMKVQFCKYESSIHSLLRFYRETKAKIINAMNANRTGGGTHSHNNQQEQPAGLPRQRITDRTPSEDKLRCRVESVVSKKPIDRLINALLHSVEDDRTDIKRQKTRHVNSALVNEIDAINAKLIDAVARIAGEKDGGTEIEFSYTASSLAPDMKQLLTAYGNGTSPVKPVKLFVPADYPRTSPVVSNSNDDGDELLRGMFGEISGMVSAAFHCALRELPPSMSVKQMASEWNSCVQMIMKKFAMRHGGGTFSSRHGQWMNCTVE
Length408
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.628
Instability index52.31
Isoelectric point8.78
Molecular weight45871.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03591
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     219.38|      67|     133|      95|     165|       1
---------------------------------------------------------------------------
   95-  165 (107.73/95.06)	DR....LLHNC.........QKTEEQLQSLPKKQ.ADQYRRIAKLKDAVRSALDlLQLQKssiDEGMKVQFCKYESSI....HSLLRFY
  188-  222 (32.13/17.75)	........HNN.........Q..QEQPAGLPRQRiTDRTPSEDKLRCRVESVVS...................................
  227-  304 (79.52/58.38)	DRlinaLLHSVeddrtdikrQKT.RHVNSALVNE.IDAIN..AKLIDAVAR....IAGEK...DGGTEIEFSYTASSLapdmKQLLTAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.43|      10|     207|     178|     187|       2
---------------------------------------------------------------------------
  178-  187 (20.81/13.72)	ANRTGGGTHS
  387-  396 (21.62/14.51)	AMRHGGGTFS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03591 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AMNANRTGGGTHSHNNQQEQPAGLPRQRITDRTPSED
2) MAILERPQSSSGIEHQGQMGNQTRLPTTVMQEQPQPQQQPHLMSDNHHQTHGGWQSNV
175
1
211
58










Molecular Recognition Features






MoRF SequenceStartStop




NANANA