<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03585

Description Uncharacterized protein
SequenceMVSILQLQTRTEASPASSAATRIFAVRRQQQQEQEGEEEEEEFEFQERMDLSGAQGELPIPMHAAASPYAGMGAHGGAGGGHVVELHHHEHVGNNGQAMAMASPPPTNVAVAEQEGSPVAGKKRGGMAVVGGGGGGVAVKYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEADDLDGDSCAAALRAAGGRHHHLLGPALPHHHHHHHHKNGGGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHQIIMPLNMIHTSESDEMDVSGGGGGGGRGSSSSSKKRFRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKVWMHNNKHNLAKKPLPSSPPPQIPMSMPPSPPPMPMPMPPSPPQLKLE
Length399
PositionHead
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.593
Instability index74.48
Isoelectric point7.03
Molecular weight42280.30
Publications









Function






Annotated function

Putative transcription factor.



ECO:0000256	ARBA:ARBA00004049

GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03585
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     194.40|      38|      52|      67|     117|       1
---------------------------------------------------------------------------
   67-  102 (61.58/21.03)	.......SPYAGMGAHGG......AGGGHVVELHHHEHVGN.NGQAMAMA
  116-  153 (42.32/25.28)	GS.pvagKKRGGMAVVGG......GGGG..VAVKYRECLKN.HAAAIG..
  154-  202 (45.87/11.05)	GNatdgcGEFMPSGEEGSlealkcSACGCHRNFHRKEADDL.DGDSCAAA
  206-  238 (44.63/12.45)	..........AG.GRHHH......LLGPALPHHHHHHHHKNgGGGGLLVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.61|      12|      20|     365|     376|       2
---------------------------------------------------------------------------
  365-  376 (27.60/ 8.67)	PLPSSP.PPQIPM
  386-  398 (24.01/ 6.84)	PMPMPPsPPQLKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.61|      10|     233|      47|      56|       6
---------------------------------------------------------------------------
   47-   56 (18.91/12.35)	ERMDLSGAQG
  282-  291 (19.70/13.21)	DEMDVSGGGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03585 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVWMHNNKHNLAKKPLPSSPPPQIPMSMPPSPPPMPMPMPPSPPQLKLE
2) SILQLQTRTEASPASSAATRIFAVRRQQQQEQEGEEEEEEFEFQERMDLSGAQGELPIPMHAAASPYAGMGAHGGAGGGHVVELHHHEHVGNNGQAMAMASPPPTNVAVAEQEGSPVAGKKRGGMA
3) YAAARALPPPPPPPPHGHHHHQIIMPLNMIHTSESDEMDVSGGGGGGGRGSSSSSKKRFRTKFTAEQK
351
3
247
399
128
314










Molecular Recognition Features






MoRF SequenceStartStop




1) NKHNLAKKPL
357
366