<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03582

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKRRLEPSSFHGGNYPPNLRRQPQVAPYKLKLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQISYLSKPDIATKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRGFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSSAPDSLRSQHWTMDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYGKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYMAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSGTLNHSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELICSGIFYPQTYVRQLIVSGITIWNDSLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEVKLMISGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWVRKEQKQELFTVETIHQSIEQTSGGKATVVQKTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDADHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCRDLLSSVRLLIWLLSKIYIGMTTSGQVGRGVMHPKHKVNQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSGEELDGHVHKKLNGKVGVLPSMKEIVQRQTDEFLRNLKENNATAPKNPSFSETEESYQTAHDIVLGLADCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQHILDIHINSLALLRETLGDRFSRIFEISLAVEASSAVAASFAPPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGIVLPPAYSIFAMVLWRPYLYDTSTLNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYANANKSSKRKLEVTSIEEREVDGLIDSRKSSNSKSLNVGTSPEGHGSTQKYFTQEALAELVLPCIDRSSSEFRFVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDYPSESLFDRLLCVLHALLGNSQPSWLKTKPSSKPAVKFLRDLSAIDKEVIKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSITCGPPLLSSAALSPFQCSTSTAGPHQQFPLNWIPTNLSSRCKAALPSQHPNIEIDPWTLLEDGTGCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2176
PositionKinase
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.195
Instability index47.87
Isoelectric point8.23
Molecular weight241120.82
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03582
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.14|      10|      21|    1029|    1038|       1
---------------------------------------------------------------------------
 1029- 1038 (18.74/10.35)	LLSVLYI.MDT
 1052- 1062 (14.40/ 6.40)	LLSKIYIgMTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.20|      16|      20|    1243|    1258|       2
---------------------------------------------------------------------------
 1243- 1258 (28.96/19.98)	HDIVLGLADCIRQNGG
 1265- 1280 (25.25/16.39)	HSLVASAVSAIVDNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.43|      45|     623|    1165|    1215|       3
---------------------------------------------------------------------------
 1165- 1215 (66.75/52.92)	LDSGKSITGDSIISGISsgEELDGHVHKKLNGKV...GVLPsmkeIVQRQTDEF
 1798- 1845 (73.68/43.01)	IDSRKSSNSKSLNVGTS..PEGHGSTQKYFTQEAlaeLVLP....CIDRSSSEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      16|    1123|    1138|       4
---------------------------------------------------------------------------
 1123- 1136 (19.67/18.48)	RQSTSVAfAYARYF
 1141- 1153 (25.33/10.56)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     251.72|      83|     622|    1363|    1449|       5
---------------------------------------------------------------------------
 1363- 1449 (124.76/89.81)	HDESGN.HANEVPSNPSKCFNVKAVKVSAAVSALVVGAIiygVVSLERM....MVVLRLKEGLDILQFLRISKAsTNG....VTHSIGNFKIDSST
 1993- 2084 (126.96/79.20)	HALLGNsQPSWLKTKPSSKPAVKFLRDLSAIDKEVIKSL...QCALDRMelpaTIRRRIQVAMPILPTSRLSSI.TCGppllSSAALSPFQCSTST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.63|      27|      36|     776|     809|       6
---------------------------------------------------------------------------
  776-  803 (44.79/41.52)	VEGRVPLSSCLQKQPDlLMDSTDD.NHGR
  815-  842 (40.84/20.25)	ISGREETKKTKKGQTD.LVDSEEDvGHAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.49|      31|      40|     631|     661|       7
---------------------------------------------------------------------------
  631-  661 (53.99/33.97)	ASGFRDSTGSIDENNKKDIFSSPGPLHDIIV
  672-  702 (54.50/34.37)	ASGFKSVDVFMTELICSGIFYPQTYVRQLIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.95|      11|      15|     889|     899|      12
---------------------------------------------------------------------------
  889-  899 (18.77/14.38)	TVETIHQSIEQ
  906-  916 (18.18/13.67)	TVVQKTQNIAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      17|      23|     575|     596|      13
---------------------------------------------------------------------------
  575-  596 (26.07/26.24)	SKDFSQVYMavsllKD..KMNEIN
  601-  619 (24.74/13.53)	SKSSSQLAM.....KDhlKSGTLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.56|      11|      24|    1522|    1532|      15
---------------------------------------------------------------------------
 1522- 1532 (18.66/ 9.95)	DIQLYQSLLGA
 1549- 1559 (19.90/11.11)	NMHLFYDLLAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.90|      40|      40|    1662|    1701|      16
---------------------------------------------------------------------------
 1634- 1666 (47.60/32.50)	....LNVLQPAKFHWQWVELRLLL......DE...QSLIEKPKNVP
 1667- 1706 (63.28/46.19)	YVKALRSLSPNAENFTLSEREKGL......TEVILSRLLVRPDAAP
 1708- 1743 (33.02/19.78)	YSELIHLLGKLQESFVM.....GIkwflqgQDVLLGNNSVR.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.63|      15|      29|    1570|    1584|      17
---------------------------------------------------------------------------
 1570- 1584 (26.64/16.73)	VELRSPDECLKALSP
 1589- 1600 (20.35/10.81)	VFLNALLDCE...IP
 1601- 1613 (23.64/13.90)	VTMR..DDGTYALEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03582 with Med12 domain of Kingdom Viridiplantae
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