<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03575

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMMQSHHPSPARLGLTASSPSLPPNPAAVNPTSSPPHGNPSAAAAVGAAAAAAAAPTLTTSPSLLPLLPPLPRAQALLQLISALASNLFELSPSRAAWISAYRGSLPTFLPSPSSAPPPPLPAPISSTKEALSLLNTLQTQLFEAVAELQETLDLQDARARLAREACSKDASILAFAKKLREAHHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGDFGASLHSKLNLDDVLTYAHRISYTTFAPPEHGAGLPLRGALPPAPQENEMRMSQLYQFADLDVGVPKSQEAKERTAAEGDATPLFQPSPTQEAAVLPITVPHPHGWRNGALPLEIPLPPPGWKPGDPITLPPDGILAGVKGEEPRASVPQMPVVVPAMVPKAQEPIQVRHVDLDINNSSSSDEYSSDVGSSEEDDEDYNLNQTGP
Length424
PositionMiddle
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.330
Instability index58.21
Isoelectric point4.98
Molecular weight44798.82
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03575
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     209.58|      43|      81|       8|      51|       1
---------------------------------------------------------------------------
    8-   36 (37.41/13.27)	.............................SPARLgLTA.SSPSLP...PNP...AAVNPTSSP.PH
   37-   84 (47.84/14.90)	GN.....P.SAAAAVGAAAAAaaaptlttSPSLL.......PLLP...PLP.raQALLQLISA.LA
   85-  120 (32.68/ 7.83)	SNlfelsP.SRAA.....................wISA.YRGSLPtflPSP...SSAPP...P.PL
  283-  323 (41.04/11.74)	GV.....PkSQEAKERTAAEG.................dATPLFQ...PSPtqeAAVLPITVPhPH
  324-  352 (50.62/16.20)	GW.....R.NGALPLEI........................PLPP...PGW...KPGDPITLP.PD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03575 with Med4 domain of Kingdom Viridiplantae
Unable to open file!