<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03572

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVGIPTANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSTVQSPSPSLISQETSLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQPIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGSIQSNIGISGHPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQIQQMQQQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length823
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.470
Instability index56.19
Isoelectric point8.84
Molecular weight88167.57
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03572
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     167.83|      22|      22|     738|     759|       1
---------------------------------------------------------------------------
  692-  711 (28.85/ 6.03)	..GHPLQ..QQQMQQMQQQQQIQQ
  712-  731 (30.79/ 7.06)	M....QQqqQQQMQQMQQQQQQPQ
  732-  752 (34.58/ 9.09)	QL...QQqqQPQMVGTGMGQQQPQ
  753-  776 (41.43/12.76)	MVGSGMGqqQPQMVGAGMGQQQPQ
  777-  796 (32.17/ 7.80)	MVGAGMG..QQYMQGHGRTVQ..Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.84|      19|      23|     647|     669|       2
---------------------------------------------------------------------------
  509-  527 (37.80/ 7.85)	QH...PNAQQQQQQQQQQQPPP
  648-  669 (36.03/15.52)	QHqlqPQNQLQQQHQLQQQLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.00|      23|      24|     250|     272|       3
---------------------------------------------------------------------------
  255-  279 (34.33/13.13)	KMDTAATS..VPVPTSNGNPsvN.GPML
  396-  418 (27.77/ 9.20)	TGQPIG.S..QQV.VQNTAFgsN.TPIT
  419-  444 (23.90/ 6.88)	GNSNIAVSssLGSIQSNIGI..SgHPVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     152.93|      24|      24|     459|     482|       4
---------------------------------------------------------------------------
  282-  302 (26.53/10.27)	...QPNGVVGIPTANIKTEPTT.LP
  313-  332 (31.85/13.90)	VTPVANGVSQ.GLSTVQS.PS...P
  353-  369 (20.68/ 6.29)	INPIQQSIRPGGPANVS........
  459-  482 (43.63/21.92)	INTNQNMISSLGTTTVSSAPAM.MP
  486-  506 (30.25/12.81)	M.AQQAGVNSLGVTN.SS..AMnMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.39|      13|      43|     535|     558|       7
---------------------------------------------------------------------------
  535-  549 (21.44/ 6.50)	GtlS.GQRQGQPVFIC
  559-  572 (14.94/11.60)	A..SeTQYVGKADFLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03572 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIISGGMPGIPMSGTGQPIGSQQVVQNTAFGSNTPITGN
2) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVGIPTANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSTVQSPSPSLISQETSLANDSVQEHKPLINPIQQSIRPGGPANVSILN
4) QMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SNIGISGHPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSL
6) SSAMNMPIVQHPNAQQQQQQQQQQQPPPKYVKIWEG
381
243
315
719
434
500
420
313
372
823
495
535










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIWE
528
534