<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03567

Description Uncharacterized protein
SequenceMDGGGGGNWRPTQGADPAASGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTDTYEKMKSFKLMLERTMHVLQLNKGNIQPALRDRIPAYERQIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGASGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSPQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFNIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDVDSFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1201
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.735
Instability index71.25
Isoelectric point9.43
Molecular weight131298.76
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03567
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     527.29|      62|      63|     528|     589|       4
---------------------------------------------------------------------------
   10-   68 (43.18/ 6.69)	.....RP..TQ..............................GAD......P..AAS...G............GIDPNAPAPAP.A...G...GDW.RSQ..L.....Q..SEARNRIVNKI.M.DT.LKKH..LPVSvpeG
  146-  194 (54.98/10.67)	S..QQQAR..Q..............................PNS......TSVQSSltnL............GQ....NLPGV.N...Q...TST..LQ............NMSG.MPQ.....NT.MNNG..LA......
  219-  269 (60.67/12.58)	...QNQLI.YQ..............................QQQ......IMMKQK...L............QQ...NSLMQQ.QsllQ...PTQ..MQ..............SSQQPMMQ.I.PS....G..LQ.P...G
  273-  378 (43.00/ 6.63)	P..QTQPM.VQsssqggiqqnalnsvpqsvqsllqqptqsaMRQ......QQHSQS...SmhpqpslqqaqpTQQP..NIPLQ.H...QlmgQQQ.NLQ..QnqligQ..QNGAVDMPQQQrL.P........VQSN...N
  528-  589 (115.67/31.12)	S..QKRPR.VQ..............................GQQ......TQFQQS...A............GQGPTSNIPQQ.Q...Q...PSQ.GLQ..Q.....H..DNHTNQMPQAS.M.PS.MSTG..LQSS...G
  591-  644 (48.83/ 8.59)	SgiQHLP...A..............................SPA......TNFGVP...A............TQQNVTNAP.......Q...ATS.NLEvtQ.....G..SNF.NSLQHG.....S.MSGA..LQ......
  694-  768 (51.99/ 9.66)	Q..QQEHHmMQ..............................SPQmkrqmfQQFQQKqmlQ............QQLPAQQQLQK.Q...Q...QSQmQVP..Q.....HhsGNDANELKVRQ.G.AA.MKPG..IYQQ...H
  769-  828 (56.68/11.24)	L..AQRNN.FY..............................NQQ......IK.QGS...A..............FPISS.PQN.L...Q...ASS.P....Q.....I..SHHSPQVDQHN.LlPSqVKTGtpLQSA...N
  833-  885 (52.31/ 9.77)	P..SPSPP.VA..............................PSP......IPVD..................SEKPLSNLSSSlT...N...TGQ.ATH..Q..........QTNMAPQ......T.QSIA..VNTP...G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.01|      15|      22|     447|     467|       6
---------------------------------------------------------------------------
  447-  463 (22.17/13.27)	NLKDQYFPelNDLYNKI
  472-  486 (27.84/17.35)	NMVPPQKP..TDTYEKM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.60|      19|     198|     886|     914|       8
---------------------------------------------------------------------------
  886-  904 (29.62/ 9.44)	IS..ASPLLAEFTSVDGNQAN
 1119- 1139 (26.98/25.97)	YPkcSPVLLDKFPDEQRNSDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.26|      15|      28|     958|     972|      12
---------------------------------------------------------------------------
  958-  972 (25.17/20.31)	GNGSRAAVGEDLVAM
  987- 1001 (26.09/21.38)	GTGTSKKMKRDTSAM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03567 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGGGGGNWRPTQGADPAASGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNEL
2) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
3) QIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGASGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSPQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQTQSIAVNTP
4) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPN
5) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
1
890
521
233
95
72
929
884
433
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA