<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03565

Description Uncharacterized protein
SequenceMDGGGGGNWRPTQGADPAASGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTDTYEKMKSFKLMLERTMHVLQLNKGNIQPALRDRIPAYERQIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGASGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSPQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFNIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDVDSFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGREGGYTTGHSRGHQTSVGIQLQMLFFLCGLCVSNI
Length1347
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.759
Instability index72.00
Isoelectric point9.37
Molecular weight147639.63
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03565
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     610.56|      67|      67|     386|     452|       1
---------------------------------------------------------------------------
  104-  173 (49.31/ 7.71)	METKTQQN....PGN.....AQ............viQ...N..............QNppgSV....PGLPQ....GSNPTQSSaipLMSQ...Q..QARQ...PnstsvQSSLTNLGQNL....PG....VN.....
  174-  240 (49.98/ 7.94)	.QTSTLQN....MSG.....MP..............QNTMNnglaqgasqdiyatQR...QM....AGRQQQQ................Q...Q..SQNQliyQ.....QQQIMMK........QK....LQQ.NSL
  241-  302 (65.81/13.35)	MQQQSLLQ....PTQ.....MQ............ssQQPMM..............Q.....I....PS.......GLQPGQSI...PQTQ...PmvQSSS...Q..ggiQQNALNSVPQ......S....VQ...SL
  303-  359 (69.35/14.56)	LQQPTQSA....MRQ.....QQ..............HS.................QS...SM.hpqPSLQQAQP.TQQPNIP....LQHQlmgQ..QQNL...Q.....QNQLIG.....................Q
  360-  439 (106.93/27.40)	.QNGAVDM....PQQ.....QRlpvqsnnllnmqqtQQMLN..............QQ...SM....PSHQQQQL.GSQANIST...LQQQ...Q..QQNQ...Q.....QQQLLGTVPNV....PN....IQR.MHM
  440-  499 (64.07/12.75)	LQTKAVQQ....PQQ.....QQ.............hAQ.................QS...SLglmqPQSQHNQLqQSQQHLMS....QFQ...A..QPNQ...L.....QQQ.LG.MPQQ....P............
  551-  618 (46.51/ 6.75)	TGTGDWQE....EAY.....QM..............VKNLK..............DQ...YF....P.....EL.NDLYNKIS...LKLQ...H..VDNM..vP.....PQKPTDTYEKM....KSfklmLERtMHV
  759-  819 (48.40/ 7.40)	..SGALQQgstgPMQgtlnaQQ...........qasSSMLS..............HN...SV....GTMQANAN.SMQANANS...LQQL...K..QQ............QQ....................E.HHM
  820-  863 (55.31/ 9.76)	MQSPQMKR....QMF.....QQ...........fqqKQML..............................QQQL.PA................Q..QQLQ...K.....QQQSQMQVPQ................HH
  864-  932 (54.90/ 9.62)	SGNDANEL....KVR.....QG......aamkpgiyQQHLA..............QR...NN....FYNQQIKQ.GSAFPISS...PQNL...Q..ASS..................PQIshhsPQ....VDQ.HNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.88|      24|      26|     648|     673|       2
---------------------------------------------------------------------------
  648-  673 (33.88/15.35)	QKRPRvQGQQtQFQQSAGQGPTSNIP
  675-  698 (42.00/13.34)	QQQPS.QGLQ.QHDNHTNQMPQASMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     128.86|      27|      55|     994|    1020|       3
---------------------------------------------------------------------------
  950-  968 (32.10/18.10)	Y..MPS.....PSPP..VAPSPI.....PVDSE
  994- 1020 (45.14/29.14)	Q..TQSI..AVNTPG..ISASPLLAEFTSVDGN
 1027- 1049 (23.04/10.43)	QvlTKSS..AAE........RPLDRLLKALRTT
 1050- 1078 (28.59/15.13)	Q..RQSLsaAVSDIGsvVSMIDRIAG..SAPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.37|      43|     588|     504|     550|       4
---------------------------------------------------------------------------
  504-  550 (65.09/41.94)	RLQTSA....GMLLQQNNIDQQKqfmQAQRGLqEVSSSTSVDSTAQT........GHTG
  714-  768 (59.28/27.45)	HLPASPatnfGVPATQQNVTNAP...QATSNL.EVTQGSNFNSLQHGsmsgalqqGSTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.50|      26|      32|      28|      53|       6
---------------------------------------------------------------------------
    6-   22 (23.96/10.80)	......GGNWRP...TQGADPAASGG
   28-   53 (46.75/29.06)	PAPAPAGGDWRSQLQSEARNRIVNKI
   62-   83 (35.78/20.28)	PVSVPEGLN...ELQKIA.VRFEEKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03565 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGGGGGNWRPTQGADPAASGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNEL
2) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
3) QIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGASGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSPQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQTQSIAVNTP
4) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
5) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
1
1009
640
233
95
72
1048
1003
560
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA