<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03564

Description Uncharacterized protein
SequenceMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTDTYEKMKSFKLMLERTMHVLQLNKGNIQPALRDRIPAYERQIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGASGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSPQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFNIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDVDSFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1267
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.773
Instability index72.69
Isoelectric point9.31
Molecular weight139386.57
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03564
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     564.05|      67|      67|     333|     399|       1
---------------------------------------------------------------------------
   51-  120 (49.31/ 6.72)	METKTQQN....PGN.....AQ............viQ...N..............QNppgSV....PGLPQ....GSNPTQSSaipLMSQ...Q..QARQ...PnstsvQSSLTNLGQNL....PGVN....
  121-  187 (49.98/ 6.93)	.QTSTLQN....MSG.....MP..............QNTMNnglaqgasqdiyatQR...QM....AGRQQQQ................Q...Q..SQNQliyQ.....QQQIMMK........QKLQQNSL
  188-  249 (65.81/11.92)	MQQQSLLQ....PTQ.....MQ............ssQQPMM..............Q.....I....PS.......GLQPGQSI...PQTQ...PmvQSSS...Q..ggiQQNALNSVPQ......SVQ..SL
  250-  306 (69.35/13.04)	LQQPTQSA....MRQ.....QQ..............HS.................QS...SM.hpqPSLQQAQP.TQQPNIP....LQHQlmgQ..QQNL...Q.....QNQLIG................Q
  307-  386 (106.93/24.90)	.QNGAVDM....PQQ.....QRlpvqsnnllnmqqtQQMLN..............QQ...SM....PSHQQQQL.GSQANIST...LQQQ...Q..QQNQ...Q.....QQQLLGTVPNV....PNIQRMHM
  387-  446 (64.07/11.37)	LQTKAVQQ....PQQ.....QQ.............hAQ.................QS...SLglmqPQSQHNQLqQSQQHLMS....QFQ...A..QPNQ...L.....QQQ.LG.MPQQ....P.......
  706-  766 (48.40/ 6.43)	..SGALQQgstgPMQgtlnaQQ...........qasSSMLS..............HN...SV....GTMQANAN.SMQANANS...LQQL...K..QQ............QQ................EHHM
  767-  810 (55.31/ 8.61)	MQSPQMKR....QMF.....QQ...........fqqKQML..............................QQQL.PA................Q..QQLQ...K.....QQQSQMQVPQ...........HH
  811-  879 (54.90/ 8.48)	SGNDANEL....KVR.....QG......aamkpgiyQQHLA..............QR...NN....FYNQQIKQ.GSAFPISS...PQNL...Q..ASS..................PQIshhsPQVDQHNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.09|      14|      67|     915|     928|       3
---------------------------------------------------------------------------
  915-  928 (20.21/10.62)	EKPLSNLSSSLTNT
  983-  996 (18.88/ 9.39)	ERPLDRLLKALRTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.95|      21|      40|     640|     661|       4
---------------------------------------------------------------------------
  648-  668 (32.61/12.46)	STGLQSSGASGIQHLPAS.PAT
  669-  688 (29.51/10.42)	NFGVPATQQNVTNAPQAT..SN
  885-  904 (24.83/11.59)	KTGTPLQSANSPYMPSPSpP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     199.29|      67|     505|     468|     553|       5
---------------------------------------------------------------------------
  468-  514 (62.12/28.68)	..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QKQFM.QAQRGLQEVSSSTS.V.DSTAQTGhTGTGT.GDWQEEAYQMVKNL
  531-  553 ( 7.91/22.78)	LKLQHvDNMVpPQKPTDTYEKMK..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  997- 1040 (35.55/ 9.11)	.......................sfklmlertmhvlqlnkgniqpalrdripayerqiisilnsqkrprvqgqqtqfqqsagqgptsnipqqqqpsqglqqhdnhtnqmpqasmpsmstglqssgasgiqhlpaspatnfgvpatqqnvtnapqatsnlevtqgsnfnslqhgsmsgalqqgstgpmqgtlnaqqqasssmlshnsvgtmqanansmqananslqqlkqqqqehhmmqspqmkrqmfqqfqqkqmlqqqlpaqqqlqkqqqsqmqvpqhhsgndanelkvrqgaamkpgiyqqhlaqrnnfynqqikqgsafpisspqnlqasspqishhspqvdqhnllpsqvktgtplqsanspympspsppvapspipvdsekplsnlsssltntgqathqqtnmapqtqsiavntpgisaspllaeftsvdgnqanmptqvltkssaaerpldrllkalrttQRQSL.SA..AVSDIGSVVSmI.DRIAGSA.PGNGSrAAVGEDLVAMTK..
 1041- 1103 (93.72/41.27)	CRLQA.RNFI.THDGTGTSKKMK................................................................................................................................................................................................................................................................................................................................................................................................................................................................rDTSAMPLNVSSAGS.VnDSLKQT..FNIGT.PELQSTATSRVKWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      25.57|       8|      30|     934|     943|       6
---------------------------------------------------------------------------
  934-  943 ( 8.50/ 9.63)	QQTNMaPqTQ
  967-  974 (17.06/ 6.48)	NQANM.P.TQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03564 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
2) QIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGASGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSPQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQTQSIAVNTP
3) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
4) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
956
587
180
42
995
950
507
175










Molecular Recognition Features






MoRF SequenceStartStop




NANANA