<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03560

Description Uncharacterized protein
SequenceMDELGIIEQGVDWRTRLGQDIRDCMINDILFSLQTKLQSTTTALIDLQKVAVRIEERIHTIASDYGDYLRRICLTRGDLDSYDVFLNDCQRQQASIRSSILLHQENKQGVLSNQVALNDHKEHSHPYEKDMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLNIYWFHMDREKFSSFLDKLLLSRVQADAPMDTFELKSFAIDRANYWINHAIKHNAKVLKFAEYGKWEPFYLDPNLVELSSRYLETLELTNVALDATIFNQLANACPALQNMLLTDCLLEVEEISSSSLKNLDIIDCYILKDLSICTPSLVSLCIKNERTDNSSFRNSYLIFATAIIIDASNVSSMELLAMDRQFTFVEKDGGEPMFKNLRNLSLGLWCITNMFSPLRRFVRHSPMLRMVTLRISPLDWKSHLTKEHQEMLISIRNLFDGMQQGAAGQAGPSGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDERADQERFHGFVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIDFSARHHLDDPKPELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNPLEGQIQSTSLKRLSIINCFISDGFLVDAPNLISLCFFRPLSGKSTEGANHSSDNRSWPFSASVWEFDDDGSDHDDDFFAIASGGEHFDDKRDNESDQDNGSSDEDSDDKRDHESDHDDDVPSSPYSDSKDSCDGNDSECESYESGDKEGDDLEDCYSNDMLENLIKVAKGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIHRGRGDIDPSGGSFACNNLKKVKITCCKDDEMVHMLKQFLQRNGISLEKIVHHTSSTHNGKEDGGGDSSAKRKAQGEVARLAVKQRRARNSELFDGMHQGAAGPRPSGGGGDRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVRYPCACDGRAVDQKRFRDFVTILLLRRRPLAPFKALRLSWSHDEDDVNAWIAHAVRRGAEEIDLSARRHQGYPVPDYKHFISPKIKILKLTHLRTTRFTADNTLDLVCSGCTSLEELELKDIKSLWGGIQSDSLKRLSIINCHVTSDGFLVEAPNLISLCCIRPVRAVPWFSHMVSLVEATVVLDDSRLSDDYQQPVLDDDDDGSDYDDCFFAPKAEGSDDKRDNEADNDSGDKKNRDGSESDLDDHDGEYDHEDGDKEVDDLEGGVDRTVTYGEIADESSSYGIPTPTPSNEYGGNYGNHDYTILGGDHMLDNLSDVRTLGLLGHQGEDIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIFVRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVKQLRRARNSNPFDGMQQGAAGQAPRRDDGEAAGPSGGGGGGGEDRISALPDAVLGRIVSHLKTWQAVRTSVLSKRWRDVWASAPRVDIRHPCACDERADQERFHGFVDTLLLRRRPFAPIKALRLCWTHDGDANNWIAHAVRRGAEEIELSTRHHQGSLEPEPEFTSFISPKIKILKLTRVGMDIRSITQICSRCTSLEELELDDVRLLEGQIQSASLKRLSIIKCYIDDGFLVDAPNLVSLCFIRPLGIERKGGANSSSDRLWWPVWLNDDDGYDHDDDFFANASAVQSDDKRGSKSDQDDLEGCNDDDRTVAYDEIADEYSSNGGPGDEHGGYSESDDSTICGPYGLFNVLVKTSLIMIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYLHLDMVHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRIFVRRTSRTRRDSRAKQKEQEDHLRLAKKW
Length1929
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.503
Instability index43.87
Isoelectric point5.73
Molecular weight217252.89
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03560
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     318.46|      42|      44|    1214|    1255|       1
---------------------------------------------------------------------------
  665-  689 (37.71/16.32)	.............CFFRPLS......G...........KSTEGAN.HSSDNRSWPF
  694-  734 (70.49/37.80)	WEF.DDDGSDHDDDFFAIAS....G.GEhfD.....DKRDNESDQ.DNGSS...DE
  736-  779 (51.20/25.16)	SDDkRDHESDHDDD..VPSS....P.YS..DskdscDGNDSECESyESGDK...EG
 1214- 1255 (82.85/45.90)	LDD.DDDGSDYDDCFFAPKA....E.GS..D.....DKRDNEADN.DSGDKKNRDG
 1674- 1698 (25.04/ 8.01)	.............CFIRPLGierkG.G................AN.SSSDRLWWPV
 1699- 1732 (51.18/25.14)	WLN.DDDGYDHDDDFFANAS....AvQS..D.....DKRGSKSDQ.D.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|    2074.88|     426|     505|     869|    1373|       2
---------------------------------------------------------------------------
  130-  453 (434.29/311.36)	............DMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLNiYW.....FHMDREKFSSFLDKLLLSRvQADAPMDTFELK.SFAIDRANYWINHAIKHNAKVLKF.AEYGKWE..P.......FYLDPNLVELSSRYLE.TLELTNvalD.ATIfNQLANACPALQNMLLTDCLLEVEEISSSSLKNLDIIDCYILKD.LSICTPSLVSLC.IKNERTdNSSFRNSYLIFATAIIIDASNVS...............................................................................................................................................................................................................................................................................................................................................................................smellamdrqftfveKDGGEPMFKNLRNLSLGL....wCITN.MFSPLRRFV.RHSPMLRMV.TLRISpldwKSHLTKEHQEMLISI...................RN..LFDGMQQGAAG.qAG
  454-  664 (317.30/213.98)	PSGGGGgggggaDRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVR.HPCACDERA.DQERFHGFVTTMLLRR.RPFAPIKALRLCWSHDGDA.NNWIAHAVRRGAEEIDFSARHHLDD..PKPEleYTSFISHKIKILKLTRVRmGIKFIT...Q.......ICYRCTFLEELELKNVNPLEGQIQSTSLKRLSIINCFI.SDGFLVDAPNLISL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  758-  965 (189.02/133.16)	....................................................................................................................................................................................................................................................................cffrplsgksteganhssdnrswpfsasvwefdddgsdhdddffaiasggehfddkrdnesdqdngssdedsddkrdhesdhdddvpsspysdSKDscdgndsecesyesgdkegdDLEDC...Y........SNDmLENliKVAKGLTaYhGEV.............................................................................................................................LLRRQLENFPM..........FNNLKTLSLGEWCMVPDFSALSTilkkspkverLYL..HL.D.MIHRGRGDIDPSGGSFACNNLKK.................................vkitcCKDDEMVHMLKQFLQRNGISLEKI.VHHTS....STHNGKEDGGGDSSAKRKAQGEVARLAVKQ.RRARNSELFDGMHQGAAG..PR
  966- 1456 (731.82/607.71)	PSGGGG......DRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVR.YPCACDGRAVDQKRFRDFVTILLLRR.RPLAPFKALRLSWSHDEDDVNAWIAHAVRRGAEEIDLSARRHQGY..PVPD..YKHFISPKIKILKLTHLR.TTRFTA...D.NTL.DLVCSGCTSLEELELKDIKSLWGGIQSDSLKRLSIINCHVTSDGFLVEAPNLISLCcIRPVRA.VPWFSHMVSLVEATVVLDDSRLS............................................ddyqqpvldddddgsdyddcffapkaegsddkrdneadndsgdkknrdgSES....................DLDDHdgeYdhedgdkeVDD.LEG..GVDRTVT.Y.GEI.............................................................................................................................ADESSSYGIPTptpsneyggnYGNHDYTILGGDHMLDNLSDVRT..........LGLlgHQgE.DIHRSRGGIN............................PTGGSFACNNLKKVKITC.....RKDDVMVHMLAKFLQRNGISLQKIfVRRTS....STHNGEEGTGKDSSAKRKAQDEAARRAVKQlRRARNSNPFDGMQQGAAGqaPR
 1465- 1673 (317.09/213.83)	PSGGGG..gggeDRISALPDAVLGRIVSHLKTWQAVRTSVLSKRWRDVWASAPRVDIR.HPCACDERA.DQERFHGFVDTLLLRR.RPFAPIKALRLCWTHDGDA.NNWIAHAVRRGAEEIELSTRHHQGSlePEPE..FTSFISPKIKILKL......TRVGM...DiRSI.TQICSRCTSLEELELDDVRLLEGQIQSASLKRLSIIKCYI.DDGFLVDAPNLVSL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1799- 1928 (85.36/47.12)	...............................................................................................................................................................................................................................................................................................................................................................................................................................cfirplgierkggansssdrlwwpvwlndddgydhdddffanasavqsddkrgsksdqddlegcndddrtvaydeiadeyssnggpgdehggysesddsticgpyglfnvlvktslimiaregelLLRRELENFPM..........FINLNTLSLGEWCMVPDFSALSTilekspnverLYL..HL..dMVHRGRGDIDPSGGSFACNNLKK............................VKITC.....CEDDVMVHKLAEFLEANGLQRQRIfVRRTS....RTRR.......DSRAKQKEQEDHLRLAKK........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.01|      10|     988|     843|     852|       3
---------------------------------------------------------------------------
  843-  852 (18.83/13.95)	ILKKSPKVER
 1833- 1842 (19.18/14.37)	ILEKSPNVER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03560 with Med15 domain of Kingdom Viridiplantae
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