<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03559

Description Uncharacterized protein
SequenceMDELGIIEQGVDWRTRLGQDIRDCMINDILFSLQTKLQSTTTALIDLQKVAVRIEERIHTIASDYGDYLRRICLTRGDLDSYDVFLNDCQRQQASIRSSILLHQENKQGVLSNQVALNDHKEHSHPYEKDMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLNIYWFHMDREKFSSFLDKLLLSRVQADAPMDTFELKSFAIDRANYWINHAIKHNAKVLKFAEYGKWEPFYLDPNLVELSSRYLETLELTNVALDATIFNQLANACPALQNMLLTDCLLEVEEISSSSLKNLDIIDCYILKDLSICTPSLVSLCIKNERTDNSSFRNSYLIFATAIIIDASNVSSMELLAMDRQFTFVEKDGGEPMFKNLRNLSLGLWCITNMFSPLRRFVRHSPMLRMVTLRISPLDWKSHLTKEHQEMLISIRNLFDGMQQGAAGQAGPSGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDERADQERFHGFVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIDFSARHHLDDPKPELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNPLEGQIQSTSLKRLSIINCFISDGFLVDAPNLISLCFFRPLSGKSTEGANHSSDNRSWPFSASVWEFDDDGSDHDDDFFAIASGGEHFDDKRDNESDQDNGSSDEDSDDKRDHESDHDDDVPSSPYSDSKDSCDGNDSECESYESGDKEGDDLEDCYSNDMLENLIKVAKGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIHRGRGDIDPSGGSFACNNLKKVKITCCKDDEMVHMLKQFLQRNGISLEKIVHHTSSTHNGKEDGGGDSSAKRKAQGEVARLAVKQRRARNSNLFDGMHQGAARQAGPSGGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASAPRVDIRHPCACDERADQERFGDFVTTMLLNRRPFAPIKALRLWWSHDGDAETWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISPKIKILKLTTFGMDIKAITHICSRCTSLEELELKDFRRLDGQIRSASLKRLSIINCFISVAFLVDAPNLISLCFIRPLSFERTKESICSSDNRRWPAPVWKDDNDGFDHDDIFAIASGEHFDDKRENESDQDYGFGDGSDDYIASESDHDDDGPPSPYSVSYDGDNECESYEPRDKEESDRTVAYGEIADEYSSNGDPSDEYRGNYVSHDSANYGRANKFGNLKFPVKSIVDASAHEGELLLRRLLENFPMFNNLDTLSLGEWCMVPDFSALSTILTKSPNAKRLYLHLDVIHRRRRSIDPSGGSFSCNNLEKVKITCCKDDVMVHMLAQFLQDNGVSPEKIFVRRTSSPHNGKEGRGSNSSAKRKAQGEVARLAVKQRRARNSELFDGMHQGAAGPRPSGGGGDRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVRYPCACDGRAVDQKRFRDFVTILLLRRRPLAPFKALRLSWSHDEDDVNAWIAHAVRRGAEEIDLSARRHQGYPVPDYKHFISPKIKILKLTHLRTTRFTADNTLDLVCSGCTSLEELELKDIKSLWGGIQSDSLKRLSIINCHVTSDGFLVEAPNLISLCCIRPVRAVPWFSHMVSLVEATVVLDDSRLSDDYQQPVLDDDDDGSDYDDCFFAPKAEGSDDKRDNEADNDSGDKKNRDGSESDLDDHDGEYDHEDGDKEVDDLEGGVDRTVTYGEIADESSSYGIPTPTPSNEYGGNYGNHDYTILGGDHMLDNLSDVRTLGLLGHQGEMLLRRQLENCPIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMDIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIFVRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVKQLRRARNSNPFDGMQQGAAGQAPRRDDGEAAGPSGGGGGGGEDRISALPDAVLGRIVSHLKTWQAVRTSVLSKRWRDVWASAPRVDIRHPCACDERADQERFHGFVDTLLLRRRPFAPIKALRLCWTHDGDANNWIAHAVRRGAEEIELSTRHHQGSLEPEPEFTSFISPKIKILKLTRVGMDIRSITQICSRCTSLEELELDDVRLLEGQIQSASLKRLSIIKCYIDDGFLVDAPNLVSLCFIRPLGIERKGGANSSSDRLWWPVWLNDDDGYDHDDDFFANASAVQSDDKRGSKSDQDDLEGCNDDDRTVAYDEIADEYSSNGGPGDEHGGYSESDDSTICGPYGLFNVLVKTSLIMIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYLHLDMVHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRIFVRRTSRTRRDSRAKQKEQEDHLRLAKKW
Length2517
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.517
Instability index45.16
Isoelectric point5.76
Molecular weight283463.24
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03559
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     121.79|      18|      18|     712|     729|       1
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  681-  698 (26.77/ 9.54)	SSDNRSWPFS.ASVWEFDD
  720-  738 (25.13/ 8.47)	KRDNESDQDNgSSDEDSDD
 1227- 1244 (22.35/ 6.64)	KRENESDQDYgFGD.GSDD
 1266- 1283 (23.14/ 7.16)	DGDNECESYE.PRDKEESD
 1774- 1790 (24.39/ 7.98)	KRDNEADND..SGDKKNRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|    3565.81|     433|     510|     439|     910|       2
---------------------------------------------------------------------------
  130-  421 (337.72/196.03)	....................................DMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLN...IYWFHM.DREKFSSFLDKLLLSRvQADAPMDTFELkSFAID.RA.NYWINHAIKHNAKVLKF.AEYGKWEPfylDPNLVELS..SRYLETLELTNVALDATIFNQ.....LANACPALQNMLLTDC.LLEvEEISSSSLKNLDIIDCYI.LKDLSICTPSLVSLCI......K...................NERTD.................NS................................sfrnsylifataiiidasnvssmellAMDRQFtFVEKDGGE......................................................................................................................................................................PMFKNLRNLSLGLWCITNMFSPLRRFVRHSPMLRMVTLRISP.LD.................................................
  439-  910 (904.82/547.69)	NLFDGMQQGAAGQ.........AGPSggGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDERA.DQERFHGFVTTMLLRR.RPFAPIKALRL.CWSHDGDA.NNWIAHAVRRGAEEIDFSARHHLDDP...KPELEYTSFISHKIKILKLTRVRMGIKFITQ.....ICYRCTFLEELELKNVNPLE.GQIQSTSLKRLSIINCFI.SDGFLVDAPNLISLCFFRPLSGK...................STEGA.................NH...........ssdnrswpfsasvwefddDGS..........................DHDDDF.FAIASGGEHFDDkrdnesdqdngssdedsddKR.................DHESDHD......DDVPSSPYSDS...........................KD..SCDGNDSE......CESYESGDKEGDDLEDCY.....SNDMLENLIKV.AKGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDM.IHRGRGDIDPSGGSFACNNLKKVKITCCKDDEMVHMLKQFLQRNGISLEKI
  952- 1445 (852.30/510.06)	NLFDGMHQGAARQ.........AGPS..GGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASAPRVDIRHPCACDERA.DQERFGDFVTTMLLNR.RPFAPIKALRL.WWSHDGDA.ETWIAHAVRRGAEEIDFSARHHQDDP...KPELEYTSFISPKIKILKLTTFGMDIKAITH.....ICSRCTSLEELELKDFRRLD.GQIRSASLKRLSIINCFI.SVAFLVDAPNLISLCFIRPLSFE...................RTKESicssdnrrwpapvwkddN..............................DGF..........................DH.DDI.FAIASG.EHFDD.krenesdqdygfgdgsddYI.................ASESDHD......DDGPPSPYSVSydgdnecesyeprdkeesdrtvaygeiADeySSNGDPSD....eyRGNYVSHDSANYGRANKF.....GN..LKFPVKS.IVDASAHEGELLLRRLLENFPMFNNLDTLSLGEWCMVPDFSALSTILTKSPNAKRLYLHLDV.IHRRRRSIDPSGGSFSCNNLEKVKITCCKDDVMVHMLAQFLQDNGVSPEKI
 1488- 1817 (462.97/272.84)	ELFDGMHQGA............AGPR...PSGGGG.DRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVRYPCACDGRAvDQKRFRDFVTILLLRR.RPLAPFKALRL.SWSHDEDDvNAWIAHAVRRGAEEIDLSARRHQGYP...VP..DYKHFISPKIKILKLTHLR.TTRFTADntldlVCSGCTSLEELELKDIKSLW.GGIQSDSLKRLSIINCHVtSDGFLVEAPNLISLCCIRPV..R...................AVPWF.................SHmvslveatvvlddsrlsddyqqpvlddddDGS..........................DYDDCF.FAPKAEGS..DD.....................krdneadndsgdkknrdGSESDLD......DH..DGEY...............................D..H.................EDGDKEVDDLEG.....................................................................................................................................
 1836- 1985 (145.47/78.90)	..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GIPTPtpsneyGGNYGNHD..........ytilgGDHMLDNLSDVrTLGLLGHQGEMLLRRQLENCPIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMdIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKI
 2029- 2488 (862.53/516.29)	NPFDGMQQGAAGQaprrddgeaAGPS..GGGGGGGEDRISALPDAVLGRIVSHLKTWQAVRTSVLSKRWRDVWASAPRVDIRHPCACDERA.DQERFHGFVDTLLLRR.RPFAPIKALRL.CWTHDGDA.NNWIAHAVRRGAEEIELSTRHHQGSL...EPEPEFTSFISPKIKILKLTRVGMDIRSITQ.....ICSRCTSLEELELDDVRLLE.GQIQSASLKRLSIIKCYI.DDGFLVDAPNLVSLCFIRPLGIErkggansssdrlwwpvwlnDD...................................................DGY..........................DHDDDF.FANASAVQS.DD...................KR.................GSKSDQDdlegcnDDDRTVAYDEI...........................AD..EYSSNGGP......GDEH.GGYSESDDSTICG.....PYGLFNVLVKT.SLIMIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYLHLDM.VHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     255.56|      35|     535|     911|     951|       3
---------------------------------------------------------------------------
  911-  945 (71.27/50.67)	VHHTSSTHNGKEDGGGDSSAKRKAQGEVARLAVKQ
 1447- 1481 (71.53/50.91)	VRRTSSPHNGKEGRGSNSSAKRKAQGEVARLAVKQ
 1987- 2021 (69.55/49.04)	VRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVKQ
 2490- 2516 (43.20/24.14)	VRRTSRTR.....R..DSRAKQKEQEDHLRLAKK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.20|      11|    1083|    1192|    1203|       5
---------------------------------------------------------------------------
 1192- 1203 (20.69/16.74)	SSDNRRWpAPVW
 2277- 2287 (26.51/15.63)	SSSDRLW.WPVW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03559 with Med15 domain of Kingdom Viridiplantae
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