<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03558

Description Uncharacterized protein
SequenceMDELGIIEQGVDWRTRLGQDIRDCMINDILFSLQTKLQSTTTALIDLQKVAVRIEERIHTIASDYGDYLRRICLTRGDLDSYDVFLNDCQRQQASIRSSILLHQENKQGDQIVQAKRNIKGTSSSSVLSNQVALNDHKEHSHPYEKDMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLNIYWFHMDREKFSSFLDKLLLSRVQADAPMDTFELKSFAIDRANYWINHAIKHNAKVLKFAEYGKWEPFYLDPNLVELSSRYLETLELTNVALDATIFNQLANACPALQNMLLTDCLLEVEEISSSSLKNLDIIDCYILKDLSICTPSLVSLCIKNERTDNSSFRNSYLIFATAIIIDASNVSSMELLAMDRQFTFVEKDGGEPMFKNLRNLSLGLWCITNMFSPLRRFVRHSPMLRMVTLRISPLDWKSHLTKEHQEMLISIRNLFDGMQQGAAGQAGPSGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDERADQERFHGFVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIDFSARHHLDDPKPELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNPLEGQIQSTSLKRLSIINCFISDGFLVDAPNLISLCFFRPLSGKSTEGANHSSDNRSWPFSASVWEFDDDGSDHDDDFFAIASGGEHFDDKRDNESDQDNGSSDEDSDDKRDHESDHDDDVPSSPYSDSKDSCDGNDSECESYESGDKEGDDLEDCYSNDMLENLIKVAKGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIHRGRGDIDPSGGSFACNNLKKVKITCCKDDEMVHMLKQFLQRNGISLEKIVHHTSSTHNGKEDGGGDSSAKRKAQGEVARLAVKQRRARNSNLFDGMHQGAARQAGPSGGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASAPRVDIRHPCACDERADQERFGDFVTTMLLNRRPFAPIKALRLWWSHDGDAETWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISPKIKILKLTTFGMDIKAITHICSRCTSLEELELKDFRRLDGQIRSASLKRLSIINCFISVAFLVDAPNLISLCFIRPLSFERTKESICSSDNRRWPAPVWKDDNDGFDHDDIFAIASGEHFDDKRENESDQDYGFGDGSDDYIASESDHDDDGPPSPYSVSYDGDNECESYEPRDKEESDRTVAYGEIADEYSSNGDPSDEYRGNYVSHDSANYGRANKFGNLKFPVKSIVDASAHEGELLLRRLLENFPMFNNLDTLSLGEWCMVPDFSALSTILTKSPNAKRLYLHLDVIHRRRRSIDPSGGSFSCNNLEKVKITCCKDDVMVHMLAQFLQDNGVSPEKIFVRRTSSPHNGKEGRGSNSSAKRKAQGEVARLAVKQRRARNSELFDGMHQGAAGPRPSGGGGDRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVRYPCACDGRAVDQKRFRDFVTILLLRRRPLAPFKALRLSWSHDEDDVNAWIAHAVRRGAEEIDLSARRHQGYPVPDYKHFISPKIKILKLTHLRTTRFTADNTLDLVCSGCTSLEELELKDIKSLWGGIQSDSLKRLSIINCHVTSDGFLVEAPNLISLCCIRPVRAVPWFSHMVSLVEATVVLDDSRLSDDYQQPVLDDDDDGSDYDDCFFAPKAEGSDDKRDNEADNDSGDKKNRDGSESDLDDHDGEYDHEDGDKEVDDLEGGVDRTVTYGEIADESSSYGIPTPTPSNEYGGNYGNHDYTILGGDHMLDNLSDVRTLGLLGHQGEMLLRRQLENCPIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMDIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIFVRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVKQLRRARNSNPFDGMQQGAAGQAPRRDDGEAAGPSGGGGGGGEDRISALPDAVLGRIVSHLKTWQAVRTSVLSKRWRDVWASAPRVDIRHPCACDERADQERFHGFVDTLLLRRRPFAPIKALRLCWTHDGDANNWIAHAVRRGAEEIELSTRHHQGSLEPEPEFTSFISPKIKILKLTRVGMDIRSITQICSRCTSLEELELDDVRLLEGQIQSASLKRLSIIKCYIDDGFLVDAPNLVSLCFIRPLGIERKGGANSSSDRLWWPVWLNDDDGYDHDDDFFANASAVQSDDKRGSKSDQDDLEGCNDDDRTVAYDEIADEYSSNGGPGDEHGGYSESDDSTICGPYGLFNVLVKTSLIMIAREGELLLRRELENFPMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYLHLDMVHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRIFVRRTSRTRRDSRAKQKEQEDHLRLAKKW
Length2534
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.520
Instability index45.37
Isoelectric point5.78
Molecular weight285264.21
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03558
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     164.23|      18|      18|     729|     746|       1
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  698-  715 (26.77/10.56)	SSDNRSWPFS.....ASVWEFDD
  716-  736 (21.13/ 6.50)	DGSDHDDD..ffaiaSGGEHFDD
  737-  755 (25.13/ 9.39)	KRDNESDQDN....gSSDEDSDD
 1244- 1261 (22.35/ 7.38)	KRENESDQDY....gFGD.GSDD
 1283- 1300 (23.14/ 7.95)	DGDNECESYE.....PRDKEESD
 1791- 1807 (24.39/ 8.85)	KRDNEADND......SGDKKNRD
 2329- 2345 (21.31/ 6.63)	KRGSKSDQDD.....LEGC.NDD
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    3521.83|     417|     510|     456|     927|       2
---------------------------------------------------------------------------
  147-  438 (312.76/184.75)	....................................DMISKLPNDLVQHIMSFLSMREAVRTSVLSHWWVNQWTFLKSIQLN...IYWFHM.DREKFSSFLDKLLLSRvQADAPMDTFELkSFAID.RA.NYWINHAIKHNAKVLKF.AEYGKWEPfylDPNLVELS..SRYLETLELTNVALDATIFNQ.....LANACPALQNMLLTDC.LLEvEEISSSSLKNLDIIDCYI.LKDLSICTPSLVSLCI......K...................NE.....................RTDNS..............................................................................................................................................................................................................................................................................sfrnsylifataiiidasnvssmellamdrqftfvekdggePMFKNLRNLSLGLWCITNMFSPLRRFVRHSPMLRMVTLRISP.LD.................................................
  456-  927 (865.15/534.85)	NLFDGMQQGAAGQ.........AGPSggGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDERA.DQERFHGFVTTMLLRR.RPFAPIKALRL.CWSHDGDA.NNWIAHAVRRGAEEIDFSARHHLDDP...KPELEYTSFISHKIKILKLTRVRMGIKFITQ.....ICYRCTFLEELELKNVNPLE.GQIQSTSLKRLSIINCFI.SDGFLVDAPNLISLCFFRPLSGK...................ST.....................EGANHssdnrswpfsasvwefdddgsdhdddFFAI............................AsggehfddkrdnesdqdngssdedsddKRDHESDHDDDV...PSSPYSD..............................S...........................KD..SCDGNDSE..CESYESGDKEGDDLED................CY........................SNDMLENLIKV.AKGLTAYHGEVLLRRQLENF.........................................PMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDM.IHRGRGDIDPSGGSFACNNLKKVKITCCKDDEMVHMLKQFLQRNGISLEKI
  969- 1462 (807.33/493.11)	NLFDGMHQGAARQ.........AGPS..GGGGGGGADRLSALPDAALFRIVSHLTARQAVRTSVLSKRWRHVWASAPRVDIRHPCACDERA.DQERFGDFVTTMLLNR.RPFAPIKALRL.WWSHDGDA.ETWIAHAVRRGAEEIDFSARHHQDDP...KPELEYTSFISPKIKILKLTTFGMDIKAITH.....ICSRCTSLEELELKDFRRLD.GQIRSASLKRLSIINCFI.SVAFLVDAPNLISLCFIRPLSFE...................RTkesicssdnrrwpapvwkddnDGFDH........................ddIFAIasgehfddkrenesdqdygfgdgsddyiA..............................SESDHDDDG...PPSPYSV..............................SydgdnecesyeprdkeesdrtvaygeiADeySSNGDPSDeyRGNYVSHDSANYGRAN................KF........................GN..LKFPVKS.IVDASAHEGELLLRRLLENF.........................................PMFNNLDTLSLGEWCMVPDFSALSTILTKSPNAKRLYLHLDV.IHRRRRSIDPSGGSFSCNNLEKVKITCCKDDVMVHMLAQFLQDNGVSPEKI
 1505- 2002 (733.40/447.09)	ELFDGMHQGA............AGPR...PSGGGG.DRLSALPDAVLLRIVSHLKAREAVRTSGISRRWRHVWASAPRVDVRYPCACDGRAvDQKRFRDFVTILLLRR.RPLAPFKALRL.SWSHDEDDvNAWIAHAVRRGAEEIDLSARRHQGYP...VP..DYKHFISPKIKILKLTHLR.TTRFTADntldlVCSGCTSLEELELKDIKSLW.GGIQSDSLKRLSIINCHVtSDGFLVEAPNLISLCCIRPV..R...................AV.....................PWFSH...................................................................mvslveatvvlddsrlsddYQQPVLDDDDD.....GSDYDDcffapkaegsddkrdneadndsgdkknrdgS...........................ES..DLDDHDGE..YD.HEDGDKEVDDLEGgvdrtvtygeiadessSYgiptptpsneyggnygnhdytilgGDHMLDNLSDVrTLGLLGHQGEMLLRRQLENC.........................................PIFNNLNTLTLGEWCMAPDFSALSTILENSPHVERLYLNLDMdIHRSRGGINPTGGSFACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKI
 2046- 2505 (803.19/490.53)	NPFDGMQQGAAGQaprrddgeaAGPS..GGGGGGGEDRISALPDAVLGRIVSHLKTWQAVRTSVLSKRWRDVWASAPRVDIRHPCACDERA.DQERFHGFVDTLLLRR.RPFAPIKALRL.CWTHDGDA.NNWIAHAVRRGAEEIELSTRHHQGSL...EPEPEFTSFISPKIKILKLTRVGMDIRSITQ.....ICSRCTSLEELELDDVRLLE.GQIQSASLKRLSIIKCYI.DDGFLVDAPNLVSLCFIRPLGIErkggansssdrlwwpvwlnD...................................................................................................................DDGYDHDDDFfanASAVQSD..............................D.krgsksdqddlegcndddrtvaydeiAD..EYSSNGGP..GDEH.GGYSESDDSTI................CG........................PYGLFNVLVKT.SLIMIAREGELLLRRELENF.........................................PMFINLNTLSLGEWCMVPDFSALSTILEKSPNVERLYLHLDM.VHRGRGDIDPSGGSFACNNLKKVKITCCEDDVMVHKLAEFLEANGLQRQRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     255.56|      35|     535|     928|     968|       3
---------------------------------------------------------------------------
  928-  962 (71.27/40.39)	VHHTSSTHNGKEDGGGDSSAKRKAQGEVARLAVKQ
 1464- 1498 (71.53/40.58)	VRRTSSPHNGKEGRGSNSSAKRKAQGEVARLAVKQ
 2004- 2038 (69.55/39.09)	VRRTSSTHNGEEGTGKDSSAKRKAQDEAARRAVKQ
 2507- 2533 (43.20/19.20)	VRRTSRTR.....R..DSRAKQKEQEDHLRLAKK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.14|      16|    1083|    1204|    1220|       4
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 1204- 1220 (29.37/20.61)	KESICSSDNRRWpAPVW
 2289- 2304 (34.78/19.34)	KGGANSSSDRLW.WPVW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03558 with Med15 domain of Kingdom Viridiplantae
Unable to open file!