<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03556

Description Uncharacterized protein
SequenceMAIQDEVENNDPTVTVGLAVSSSKSSKYAVQWAVKNFCTNGMARFVLIHVLQRVTTVPTPMGNYIPIDKVRADIASAYEKEVECKARTMLLFYKNMCDEKAKAEVLVVKGEDVAETISNVVSMYEIHKLVVGDSSQGNFIRKSKGTRTSSQICRSVPSFCAVYVVSKGGLSAVYSPGFEGHKSSELFLSSDSSKTEIHSDDKPSLSDATPSRSFRSNLTWENLESLSSADHDRPRSLHEYLTESTSASVGDNNSNSPWASGQTPRPSNMLISDKAPVTNSPLQELMLSEDMDDVNSELEKLRLELRHIKGACKLVQDESINASQHVTDLAAKRAEEEARLSEVYSRINRVNEQAHQEKEQRNALEAQCRHVRDLARKEALQKQILQLRTSKEADKMQRLENLLELDGMSYSTFTWEDIESATSSFSEAFKIGSGSNGTVYKGNLRQTSVAIKVLTSDDSHRIKHFKQELEVLGKIRHPHLLLLIGACLDRPCLVYEYMENGSLEDRLQLKGGTAPLPWYQRLRIAWEIALALVYLHSSKPKPIIHRDLKPANILLDSNFTSKIGDVGLSTLLPLGDALSTTRTIFKDTDLVGTLFYMDPEYQRTGQVSTKSDTYALGMVLLQLLTGKPPVGLADLVEQAVENGHLVDILDKSAGKWPAQEAHELAQLGLSCLEMRSKHRPDLKCKVLVELERLKKIASAVSDPVRPVISGPPSHFICPILKRIMQDPCIASDGYSYDRVAIEMWLCENDMSPITKSRLPNKDLVPNHALLCAITSWKAEARD
Length782
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.349
Instability index41.52
Isoelectric point6.27
Molecular weight87015.15
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03556
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.02|      65|      79|     398|     464|       1
---------------------------------------------------------------------------
  398-  445 (60.77/46.11)	........................................RLENLLEL.DG..MSYSTFTWEDIESatSSFSEAFKIGSGSNGTVYKGNLR
  446-  523 (97.52/68.80)	QTSVAIKVLTSDDSHRIKH..........fkqelevlgkiRHPHLLLL.IGacLDRPCLVYEYMEN..GSLEDRLQLKGGTAPLPWYQRLR
  527-  587 (30.73/15.46)	EIALALVYLHSSKPKPIIHrdlkpanilldsnftskigdvGLSTLLPLgDA..LSTTRTIFKD............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.95|      48|     305|     328|     377|       2
---------------------------------------------------------------------------
  301-  346 (25.23/11.94)	...............LRLELRHIKgacKLVQDesinasqhvtDLAAKRAEEEARLSEVYSR
  349-  377 (35.13/23.09)	RVNEQAHQEKEQRNALEAQCRHVR...DLARK.............................
  652-  699 (76.59/49.62)	SAGKWPAQEAHELAQLGLSCLEMR...SKHRP..........DLKCKVLVELERLKKIASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.22|      14|      30|     198|     213|       3
---------------------------------------------------------------------------
  198-  213 (22.16/17.94)	HsdDKP.SLSD.ATPSRS
  231-  246 (18.05/ 7.76)	H..DRPrSLHEyLTESTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03556 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HDRPRSLHEYLTESTSASVGDNNSNSPWASGQTPRPSNMLISDKAPVTNSPLQELMLSEDM
231
291










Molecular Recognition Features






MoRF SequenceStartStop




NANANA