<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03554

Description Uncharacterized protein
SequenceMAYRGRKSGSNGYAIWASIDGTCAILGVSLSSRHPATTAPIRSTALIRIEIEAEGEAVKHAADLLGEMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINDSRAQKRKALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGVTQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSVLIEWLFNQFQERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAEVLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAGGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYLSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVFFLCEWATCDYRDCRTSLLRNVKFTGRRDLSQVHLAVSILKNKMDEINNLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHHRILKQLPGSSLFEILEEDRITEEQHLYEMMSTYSSERRLVLSELSTGQAFDANSRGEYASSSCVPKASDLFLASGGDKHGRVPEQVEDVKALVSSMLRFINPHSVEEEHCQIKTNPQGSSASTVTQVDTVDVKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQNSRGRAKVVRKTQSLAQLASSRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSVWLLKSSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQVCQIGEALVFSSLLRYENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKMNVRNSRIVPNMKDIIQRQTEEKKGITAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVASAVSAIVLNAGHTIAKHLDLSADALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDIYGNHTNDLSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEIHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWASLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSEAAEGLQSALDHLEMPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKGNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSGSNSSSGMAGDHGNLKACSWLKGALPNTAPEKQLNLFVRVVAPVERAGNALGTLAFTWATVVLLGGYPTSVNFEDFVFATTLFFLEAASLQIPAAVIRVEIALMRLLPQDYCSEGDPANDSGKINLKPTLNVFYGMVLGQGILYLAARILEFFSFFPRRSLARRGGFRGQKGVQSVDMYYEYAFEKCMNTSILAPKKMNLTTFAMDSLKSGSRKEQFCGLSLPRIVAISGAMNFISSLLDNHNKQQIHELTIQTDSGDEENCWVLKRWRQMIKQWSILEEEQWAESDILPALGLVILERLATYDLVNCVEISRSMDIIPKITGFTSNNGEKMCVNEIGQKVLIEFSLRVLRILASIGGETGITLRHKISEDPFLLDNLAEILEDSRSNQDQELREMTIDILTKLAMDESTRKEIGSIQVIVQKLMFAFVAQDGLPDSHSGCLMTIKAGQALSMLTLENADNCSAIMKEPRHGFFKDLARMLQDNRYIYVAANVLQNLCKHSRVELWDSDVLELFSVLPEVLGRVMDADGKELEVLVGLSSQICSVSPESFTKAFKQGQNEEIFVEKLINALNANSKPNAQFPGIRRVIIEQLTYMMELNSRYATYFRNHGLMEALIRVEKTPSKTEKYRLFLGKAGLMEHKVHLSSLVARAKLLIAMHST
Length2793
PositionKinase
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.185
Instability index48.67
Isoelectric point8.19
Molecular weight309423.03
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03554
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.81|      38|      79|    1430|    1468|       1
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 1430- 1468 (63.93/53.41)	MENSV.EVLVHW.FR.ILLGNCRTVYDGLIADIlGESYVLAL
 1509- 1549 (55.88/40.95)	LSNAInDITMHQpFRdICFRNTHQLYDLLAADV.GDSEFAAM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     540.86|     184|     865|     244|     531|       2
---------------------------------------------------------------------------
  244-  464 (269.86/284.51)	LLRATWFVKVTYLnQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEY.LQQLLDEFCLKEVPPSFREQSSPGLIAGVTQVK.....MKSEAPPAVG.DIDEplvhfkwwyMVRLiQWHLAEELLVPSvLIEWLFNQFQERVAVEA...........LELLMPVALGMIDIITlsqtyvrmfveilvrrLSDGPVVD.NPkrahisSVIAEVLRYMVLAVPDTFVS.LDcfpLPSFVVPDVYSR
 1111- 1314 (271.00/191.32)	LLRYENILLATDL.LPEVLSASMSRNFVLATARQPASGAFAYTRYfLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRsvdgdLVSSSGVSAGeEIDE.........QIRQ.KMNVRNSRIVPN.MKDIIQRQTEEKKGITApkspsvdredsYQIAHDIVLGLLECIR................QNGGASLDgDP......SIVASAVSAIVLNAGHTIAKhLD...LSADALGDRFSR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     256.59|      82|    1405|     896|    1028|       4
---------------------------------------------------------------------------
  759-  842 (134.76/70.86)	P..GSSLFEILEED..RITEEQHLYEMMSTYSSERrlVLSELSTGQA...FDANSRGEYASS....SCVPKASDLFLASGGDKHGRVPEQVEDVK
  905-  997 (121.83/137.45)	PlqGFPLIQSDEEDiwWVRKGTKLHESLKAEPAQK..PIKQNSRGRAkvvRKTQSLAQLASSriegSQGASTSHLCESKVGCSHHKPSIDVDNVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.63|      74|     873|    1561|    1639|       5
---------------------------------------------------------------------------
 1561- 1639 (113.41/101.54)	AMAFIPLRaRLFLNSLVDC...........KTAGAILGDGS..CASESGEAKESELKLsdRLIQLLDTL...QPAKFHWQWVELRFLLDEqaLLE
 2424- 2513 (105.22/76.56)	ALGLVILE.RLATYDLVNCveisrsmdiipKITGFTSNNGEkmCVNEIGQKVLIEFSL..RVLRILASIggeTGITLRHKISEDPFLLDN..LAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.88|      24|     873|     503|     531|       6
---------------------------------------------------------------------------
  503-  526 (40.26/38.32)	DLATVANPNFQARGAAKVVQALDK
 2609- 2632 (42.62/26.58)	DLARMLQDNRYIYVAANVLQNLCK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03554 with Med12 domain of Kingdom Viridiplantae
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