<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03553

Description Uncharacterized protein
SequenceMAPPSMDYWLGFFRGAGDSIFDAIDAAIAVAASDHPAALRSRRDAIAERLYTAHLVPGAPPAVPPAGGGAGAADAPPASLLHPEGAASVPSLCSSDRAEVITDDDGAVPRREDDPVAAETERIKAILLNDQEKSEATLLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHNSKQIRHLVRLLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRLSELPLSFPQENQGSKFFDGMDDDGNTRSNGGRDNGRLYSRNQEPARRPLPPVAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKPASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGKPRNNSNFNNNRNWSR
Length457
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.874
Instability index61.03
Isoelectric point6.40
Molecular weight50478.47
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03553
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     174.76|      49|      72|       2|      50|       2
---------------------------------------------------------------------------
    7-   79 (73.36/40.37)	DYWLGFFRGAGD..SIFDAIDAAIAVAASDHPAALRSRRDAIA...ER.LytahlvpgappavppagggagaadAPPAS
   80-  123 (43.56/21.19)	...LLHPEGAASvpSLCSS.DRA.EVITDDDGAVPRREDDPVAaetER.I.............................
  191-  225 (57.84/30.38)	DEWM....SSRD..AIVDHTPQSM......HPSGL..EQD......ERgL........................SSPSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.86|      24|      72|     356|     379|       3
---------------------------------------------------------------------------
  356-  379 (44.58/22.36)	PAQGRSQPMPSDKPASHHDENSVR
  430-  453 (46.28/23.48)	PKQANRNWQPNGKPRNNSNFNNNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.22|      36|     241|     139|     176|       4
---------------------------------------------------------------------------
  139-  176 (51.06/49.62)	LELLRRlQQLELTVDT.LTVTEiGKAVSSYRK.HNSKQIR
  382-  419 (50.16/38.02)	LELAKN.AKLELTNSAkLEVTK.RKLQEGYQEfDNAKKQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.90|      39|      44|     248|     291|       5
---------------------------------------------------------------------------
  226-  268 (61.41/35.73)	DEGALFATPSTSIRlSELP....................lsfPQE.NQGS...KFFDGM.DDDGNTRS
  273-  339 (45.49/19.30)	DNGRLYSRNQEPAR.RPLPpvaqqydpdqswkqeqsamrqsrPQElSNGQtreQFIAAMlARPSNPES
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03553 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FPQENQGSKFFDGMDDDGNTRSNGGRDNGRLYSRNQEPARRPLPPVAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKPASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGKPRNNSNFNNNRNWSR
2) RDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFAT
247
197
457
233










Molecular Recognition Features






MoRF SequenceStartStop




1) MDYWLGFFR
6
14