<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03552

Description Uncharacterized protein
SequenceMAASSAAVAAAWVDWAAEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGGGGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKAANFKKKFHPIGTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISIANQAASKAAMFVSGINISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVLLVVKLLSSSDPIDFSGGESQLVKHGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIRSSAKNRNTQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGAPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWGIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWVHEVDLRVLRRLSAGLLQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1159
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.181
Instability index41.95
Isoelectric point7.35
Molecular weight125212.83
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03552
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.23|      63|      71|     667|     735|       1
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  667-  705 (43.38/28.55)	..............................SISNSS..................G...PGVDD...SHLWPQlPAWEiLEAVPFVVDAALTAC
  708-  777 (88.96/63.93)	GRLFPReLATGLKDLTDfLPASLATIVSyfSAEVTR..................GvwkPAFMN...GTDWPS.PAAN.LSMVEEHIKKIVAAT
  778-  836 (43.89/17.88)	GVDVPR.LVTGGSTLGT.LPLPLAAFVS........ltitykldkaserflnlaG...PALENlaaSCPWPS.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.81|      81|     124|     134|     229|       2
---------------------------------------------------------------------------
  134-  229 (113.89/101.35)	NFKKKfhpiGTSNPLSSP...NGRCLGaSYSAQWIPidmylEDCL..DGSIAATNSIEILSGL.VKA..LQAVN.RATWHDAflALWiaSLrLVQR..EREPIEGPV
  261-  352 (112.92/63.54)	NWKEK....RTSDDLRKElmlSLQTLG.DYESLLVP.....PPCIisIANQAASKAAMFVSGInISSgyMENVNdRTTNYSG..NMW..HL.IVESciSRNLLETSV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.94|      53|      74|     486|     559|       3
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  503-  559 (88.80/87.79)	AICEVFGSLSPSVSWS..PRTGEEISAHTVFSNAFIlLLRLWKFNHPPleyCVMG......DGAP
  576-  636 (85.14/43.72)	QVVSIRSSAKNRNTQKqlPVTSNPSSEHPIFMDSFP.KLKLWYRQHQA...CLAStlsgfaHGAP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.76|      38|     433|     450|     488|       4
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  450-  488 (64.39/43.69)	LSSSDPIDFSGGESQLVKHGpMLNVIVTGISPVD....YVPIF
  885-  926 (66.38/40.06)	MSSTTSVCSCGGIASLLGHG.FGSHCSGGLSPVApgilYLRIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.75|      47|      75|    1012|    1060|       6
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 1012- 1060 (79.97/48.05)	LPSWFLSVQD.LGRGGAASGGTVYKLGGHALAYLAvyAGMFAWGIDPTPV
 1089- 1136 (78.78/41.81)	LSLWRAYVSGfLGLVVECTPCWVHEVDLRVLRRLS..AGLLQWKEDELAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03552 with Med33 domain of Kingdom Viridiplantae
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