<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03551

Description Uncharacterized protein
SequenceMAASSAAVAAAWVDWAAEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGGGGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKAANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSDDVSAFDGTFSEQRIDKIDKLQKVNNVITIELIGHLLHDKVITHILSLARENIKFHPIGTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISIANQAASKAAMFVSGINISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLVNVLVATPAPSLAEVQKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVLLVVKLLSSSDPIDFSGGESQLVKHGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIRSSAKNRNTQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGAPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWGIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWVHEVDLRVLRRLSAGLLQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1261
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.163
Instability index40.67
Isoelectric point6.50
Molecular weight136587.70
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03551
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     192.24|      63|      72|     647|     718|       1
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  647-  718 (102.17/99.64)	NHpplEYCVMG..DGAPVGSQLTP..EYLLLLrnsqvvSIRSSAKNRNTQKQLPVTSNPS.SEHPIFMDS..FPKLKLW
  721-  790 (90.07/65.69)	QH...QACLAStlSGFAHGAPVHKnvDSLLNL......MFRKANKESTSIGSLSGSSSISnSSGPGVDDShlWPQLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     198.78|      61|     734|     373|     473|       2
---------------------------------------------------------------------------
  405-  473 (99.20/127.55)	ASKAAMFVSGINISSgymenVNDRTTNYsgnMW.HL.IVESCISRNL.LETSVYYWPGYINGHVNSITHALP
 1147- 1210 (99.58/52.12)	AVYAGMFAWGIDPTP.....VSRRRERV...MWsHFeFLASALDGKIsLGCDLSLWRAYVSGFLGLVVECTP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.52|      70|     567|     258|     336|       3
---------------------------------------------------------------------------
  258-  336 (108.64/95.59)	LGASYSAQWIPIDMY..LEDCLDgSIAATnsieiLSGLVKALQA.VNRATWHDAFL..ALW...IASLRLVQrerEPIEG.......PVPHLDT
  804-  888 (96.88/63.41)	LTACSHGRLFPRELAtgLKDLTD.FLPAS.....LATIVSYFSAeVTRGVWKPAFMngTDWpspAANLSMVE...EHIKKivaatgvDVPRLVT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.36|      40|     567|     522|     563|       4
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  522-  563 (66.53/52.91)	KVSA...ATI..LCGATLLRGWNFQEH..TVLLVVKLLSSSDPIdfSGG
 1087- 1133 (55.83/36.76)	KVAAslgATLvwLSGGTALVQSLFQEMlpSWFLSVQDLGRGGAA..SGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.63|      23|     435|     567|     590|       5
---------------------------------------------------------------------------
  567-  590 (38.37/24.49)	LVKHGpMLNVIVTGISPVD....YVPIF
 1002- 1028 (39.26/20.27)	LLGHG.FGSHCSGGLSPVApgilYLRIF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.85|      39|     434|     478|     519|       7
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  478-  519 (62.03/48.45)	AWSSFMKRA.PltqSLVNVLVATPAPSLAEVQKLYEVAVD.GSD
  915-  955 (63.82/41.82)	ASERFLNLAgP...ALENLAASCPWPSMPIVAALWTQKVKrWSD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.03|      20|     565|      32|      51|       8
---------------------------------------------------------------------------
   32-   51 (37.55/16.11)	EWAARVASVVAAAGD.AP...WSP
  598-  621 (28.48/10.78)	ELAAALMAICEVFGSlSPsvsWSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03551 with Med33 domain of Kingdom Viridiplantae
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