<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03550

Description Uncharacterized protein
SequenceMAASSAAVAAAWVDWAAEYTKAAQAESRPPAEWAARVASVVAAAGDAPWSPGLAEMLARALLYGGGGGGGGGGAAWKYAEAALAAGLASPALLLAILSTRVIPHRFTRPTAYRLYLELLRRHGFNFAFQMKAANFKKIMQLIDDNLGLSKIFGFSTCEPGLVDAALDDEGLLELIPDKKAHWPTRSDDVSAFDGTFSEQRIDKIDKLQKVNNVITIELIGHLLHDKVITHILSLARENIKFHPIGTSNPLSSPNGRCLGASYSAQWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRVCMLLSITTLAIVDIIEESDSEMNSNWKEKRTSDDLRKELMLSLQTLGDYESLLVPPPCIISIANQAASKAAMFVSGINISSGYMENVNDRTTNYSGNMWHLIVESCISRNLLETSVYYWPGYINGHVNSITHALPSQLAAWSSFMKRAPLTQSLKLYEVAVDGSDEDKVSAATILCGATLLRGWNFQEHTVLLVVKLLSSSDPIDFSGGESQLVKHGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVVSIRSSAKNRNTQKQLPVTSNPSSEHPIFMDSFPKLKLWYRQHQACLASTLSGFAHGAPVHKNVDSLLNLMFRKANKESTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLVTGGSTLGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWTQKLLRSCFTATLGMSSTTSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLLMLSVKDIAETTVSRHRSDKVRKTKYVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLFQEMLPSWFLSVQDLGRGGAASGGTVYKLGGHALAYLAVYAGMFAWGIDPTPVSRRRERVMWSHFEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWVHEVDLRVLRRLSAGLLQWKEDELAVALLRRAGPEAMAAAAELIIGGDW
Length1219
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.161
Instability index40.18
Isoelectric point6.47
Molecular weight131907.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03550
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.24|      19|     299|     470|     489|       1
---------------------------------------------------------------------------
  470-  489 (32.81/21.66)	HALPsQLAAWS.....SFMKRAPLT
  766-  789 (33.44/17.60)	HLWP.QLPAWEileavPFVVDAALT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.39|      22|      71|     798|     821|       5
---------------------------------------------------------------------------
  798-  821 (29.97/22.69)	PReLATGLKDLTDfLPASLATIVS
  868-  889 (40.42/21.08)	PR.LVTGGSTLGT.LPLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.27|      17|      73|     605|     621|       7
---------------------------------------------------------------------------
  605-  621 (30.51/22.15)	PRTGEEISAHTVFSNAF
  680-  696 (32.77/24.39)	PVTSNPSSEHPIFMDSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.74|      11|      75|     834|     844|       8
---------------------------------------------------------------------------
  834-  844 (24.88/14.21)	PAFMN...GTDWPS
  909-  922 (19.86/ 9.77)	PALENlaaSCPWPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     279.30|      90|     692|     364|     463|       9
---------------------------------------------------------------------------
  364-  463 (145.72/110.41)	WKEKRTS..DDLRKELM....LSLQTLGDYESllVPPPCIISIANQA....ASKAAMFVSGINISSgymenVNDRTTNYsgnMW.HL.IVESCISRNL.LETSVYYWPGYING
 1056- 1158 (133.59/79.42)	WLSGGTAlvQSLFQEMLpswfLSVQDLGRGGA..ASGGTVYKLGGHAlaylAVYAGMFAWGIDPTP.....VSRRRERV...MWsHFeFLASALDGKIsLGCDLSLWRAYVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.80|      20|     406|     536|     555|      13
---------------------------------------------------------------------------
  536-  555 (35.67/23.29)	LSSSDPIDFSGGESQLVKHG
  945-  964 (37.12/24.58)	MSSTTSVCSCGGIASLLGHG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03550 with Med33 domain of Kingdom Viridiplantae
Unable to open file!