<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03540

Description Uncharacterized protein
SequenceMADRLDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGRRDDADDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFATQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENNGRRPTSHPALTKQEPPRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
Length531
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.960
Instability index70.14
Isoelectric point5.41
Molecular weight59113.73
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03540
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.68|      19|      19|     137|     155|       1
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  115-  133 (28.16/15.23)	DSDSDDERLRRAAASNYGH
  137-  155 (30.59/17.19)	DDDEEEEEEQEAAPAEEDE
  157-  175 (26.92/14.23)	QELDPEAVELEALTNEIDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.42|      15|      19|     330|     348|       2
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  330-  348 (22.39/21.70)	RENNGRRptshPALTKQEP
  356-  370 (27.03/14.23)	EKVQSRR....PELARQEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.83|      19|      19|     415|     433|       3
---------------------------------------------------------------------------
  396-  414 (27.04/14.58)	QSKP...L.SSDSGP.GRPlRAAP
  415-  433 (32.73/19.17)	QQKP...FVEMKSRL.ARE.QVAV
  434-  455 (22.06/10.55)	ERKPaasHVD.KSRLpAQP.SAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.95|      12|      18|      48|      65|       4
---------------------------------------------------------------------------
   53-   64 (25.84/20.20)	TAPRAPPCHHGC
   69-   80 (20.11/ 7.65)	TPTPATPVEEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      16|      18|     456|     473|       5
---------------------------------------------------------------------------
  458-  473 (27.61/20.99)	ESAKPKI...YDGLESNSR
  475-  493 (21.26/ 7.79)	EAAKRRLqerYQEAENAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.70|      17|      28|       6|      25|       8
---------------------------------------------------------------------------
    6-   25 (26.90/25.94)	DRWRELLRgaaGSAGICDVI
   35-   51 (30.80/20.08)	DAPQELLR...RRDRICEIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03540 with Med26 domain of Kingdom Viridiplantae
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