<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03540

Description Uncharacterized protein
SequenceMADRLDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGRRDDADDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFATQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENNGRRPTSHPALTKQEPPRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
Length531
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.960
Instability index70.14
Isoelectric point5.41
Molecular weight59113.73
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03540
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.68|      19|      19|     137|     155|       1
---------------------------------------------------------------------------
  115-  133 (28.16/15.23)	DSDSDDERLRRAAASNYGH
  137-  155 (30.59/17.19)	DDDEEEEEEQEAAPAEEDE
  157-  175 (26.92/14.23)	QELDPEAVELEALTNEIDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.42|      15|      19|     330|     348|       2
---------------------------------------------------------------------------
  330-  348 (22.39/21.70)	RENNGRRptshPALTKQEP
  356-  370 (27.03/14.23)	EKVQSRR....PELARQEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.83|      19|      19|     415|     433|       3
---------------------------------------------------------------------------
  396-  414 (27.04/14.58)	QSKP...L.SSDSGP.GRPlRAAP
  415-  433 (32.73/19.17)	QQKP...FVEMKSRL.ARE.QVAV
  434-  455 (22.06/10.55)	ERKPaasHVD.KSRLpAQP.SAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.95|      12|      18|      48|      65|       4
---------------------------------------------------------------------------
   53-   64 (25.84/20.20)	TAPRAPPCHHGC
   69-   80 (20.11/ 7.65)	TPTPATPVEEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      16|      18|     456|     473|       5
---------------------------------------------------------------------------
  458-  473 (27.61/20.99)	ESAKPKI...YDGLESNSR
  475-  493 (21.26/ 7.79)	EAAKRRLqerYQEAENAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.70|      17|      28|       6|      25|       8
---------------------------------------------------------------------------
    6-   25 (26.90/25.94)	DRWRELLRgaaGSAGICDVI
   35-   51 (30.80/20.08)	DAPQELLR...RRDRICEIL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03540 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGGRRDDADDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEID
2) SEFFDEMDEDGNLRHNNDGSLGNKRENNGRRPTSHPALTKQEPPRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
3) VALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFA
59
306
262
174
531
297










Molecular Recognition Features






MoRF SequenceStartStop




1) LESAKPKIYD
2) LSEFF
3) PLRAA
4) QKPFVEMKSRLAREQVA
5) RNHIRSWANGRR
6) VKQQAMLHKQSKPL
457
305
409
416
520
387
466
309
413
432
531
400