<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03539

Description Uncharacterized protein
SequenceMADRLDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKRLRRAAASNYGHNYDDDDEEEEEEQEAAPAEEDEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVVDDADDEGLPSPPLDEGAFFATQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENNGRRPTSHPALTKQEPPRNMGAVEKVQSRRPELARQEPSMRQANPQTPQNSSLQVKQQAMLHKQSKPLSSDSGPGRPLRAAPQQKPFVEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
Length502
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.923
Instability index71.19
Isoelectric point6.00
Molecular weight56245.11
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03539
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.42|      15|      19|     301|     319|       1
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  301-  319 (22.39/23.17)	RENNGRRptshPALTKQEP
  327-  341 (27.03/15.20)	EKVQSRR....PELARQEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.83|      19|      19|     386|     404|       2
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  367-  385 (27.04/14.38)	QSKP...L.SSDSGP.GRPlRAAP
  386-  404 (32.73/18.91)	QQKP...FVEMKSRL.ARE.QVAV
  405-  426 (22.06/10.40)	ERKPaasHVD.KSRLpAQP.SAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.46|      18|      18|     110|     127|       3
---------------------------------------------------------------------------
  110-  127 (30.06/17.50)	DEEEEEEQEAAPAEEDEE
  130-  147 (29.39/16.94)	LDPEAVELEALTNEIDEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.95|      12|      18|      48|      65|       4
---------------------------------------------------------------------------
   53-   64 (25.84/19.95)	TAPRAPPCHHGC
   69-   80 (20.11/ 7.47)	TPTPATPVEEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      16|      18|     427|     444|       5
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  429-  444 (27.61/25.24)	ESAKPKI...YDGLESNSR
  446-  464 (21.26/ 9.67)	EAAKRRLqerYQEAENAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.70|      17|      28|       6|      25|       7
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    6-   25 (26.90/24.99)	DRWRELLRgaaGSAGICDVI
   35-   51 (30.80/19.36)	DAPQELLR...RRDRICEIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03539 with Med26 domain of Kingdom Viridiplantae
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