<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03538

Description Uncharacterized protein
SequenceMAAATAAAAELERRVMAAVKASAARGDPPLLQAAEAARCAREASSSISVDGGAGGALAAALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLALALLTPRVVPNRQAQPEAYRLYLELLGQYTVAPVCTESVETKAMLVKSIDDALHLSDSYGFQRMDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGHDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTYYAGRPENFNILLQRLQLIGALKSKNFGTAHNLLGSLMMNIRKVVTTGYQLHKGNLLGSIDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPPAVVQSANIAARKALVALSILKDRNERGHNYSKDISSIKAAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDASAVEESPWSALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVCSEISLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFQKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSGIPPVSSQSTSSSSMSGSSLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKPVMLNGTDWPSPAATLLAVESDIEEALASAGVHINISPRTRPPIPMLPLPIATLISLSITVKMEEFNHLQGIIDKGVEICATSSSWPSMAIIGAFWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAHQERSPRFSLSPGLLYTRCCRMFPDNYFVCEEILKVVIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGMKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSVYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVVEYIL
Length1232
PositionTail
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.194
Instability index48.65
Isoelectric point7.97
Molecular weight134372.57
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03538
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.70|      18|      20|     446|     465|       1
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  446-  465 (30.65/30.67)	WPSYVVPVKDASAVeeSPWS
  469-  486 (32.05/23.82)	EGSPLMGLKDALMV..TPAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.35|      18|      18|     289|     306|       3
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  289-  306 (32.40/22.51)	GSLMMNIRKVVTTG..YQLH
  308-  327 (28.95/19.26)	GNLLGSIDRGIPEGpfPHLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.94|      16|      25|     601|     617|       4
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  601-  617 (26.44/26.45)	HRNcSFEEA.SVYSVFSC
  629-  645 (28.50/20.73)	HRP.PVEYAlSKHGVFVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     270.29|      70|     373|     773|     849|       5
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  702-  758 (81.16/57.18)	.......ACIASTLS..SSYKRKSI.LQVAN....KILKIVCH......KMSKSGIPPVSSQSTSSSSMSGSSLGTQ
  780-  849 (114.65/98.82)	LETVLA.ACAHGRLS..SRDLITGL.RNLADFLPASVAVIVSYFS...AEITRGLWKPVMLNGTDWPSPAATLLAVE
  852-  919 (74.48/48.08)	IEEALAsAGVHINISprTRPPIPMLpLPIATLISLSITVKMEEFNhlqGIIDKGV..EICATSSSWPSMA.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.17|      14|      15|     225|     238|       7
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  225-  238 (22.90/16.65)	KNTIMTLEVVEKIT
  241-  254 (24.27/18.08)	KNTQVFLRLVYRNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.11|      38|     221|     332|     380|       8
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  332-  380 (45.91/52.97)	MLLAIVPlSIASIlkeesDKIEG....GMVSvrrgELLSSLQVLGQFFGLLsP
  556-  597 (63.20/37.53)	MLHALIS.GISSI.....DVVHIlsmyGLVP....ELAAILMPLCEIFGSL.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.06|      21|      27|       6|      26|      11
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    6-   26 (31.34/17.84)	AAAAELERRVMAAVKASAARG
   34-   54 (33.72/19.70)	AEAARCAREASSSISVDGGAG
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.90|      29|      62|    1093|    1124|      16
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 1093- 1124 (43.18/34.00)	GEARLGsAGPVcsSFEGFALAYV.LLVSGASTW
 1158- 1187 (53.72/30.42)	GNIELG.CGQV..TWRTYVICFVgLLVDFAPTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.37|      10|      30|     619|     628|      17
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  619-  628 (21.30/12.10)	FLCLLRLWKF
  652-  661 (19.07/10.09)	FLLLLRNSHF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.64|      22|     145|    1063|    1085|      19
---------------------------------------------------------------------------
 1063- 1085 (33.77/21.69)	LAASMLcHAGGMKLVRLLYEQIL
 1211- 1232 (36.88/18.64)	LALSLL.ERGGPKAISTVVEYIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03538 with Med33 domain of Kingdom Viridiplantae
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