<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03533

Description Uncharacterized protein
SequenceMDAKDLVEIGMKEEDITTMLFGKKVIELTEDAFYGSKEERKIFEELFCRTGTSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVKQRRDRGQHKYGHSHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSCLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESKLSNPRNADNPLGLNHSSNFNSTHPRSRKNLLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEINDPSFHAYDMIESANVDNSADSPDELLLGANLLFSHEVDEMLLDDISNEHYCTAAVSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMQSCLNASNGTMGTNVQLGIQSSVYEASLIRGFLYLDNEGSPICWTVLNPEPPRQLICSEPISKASELHGEMNMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQKKQKVNDVPVSYCAIGQYMDHITENPAGCLISNDKEQIGSASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKSEERRDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIRCRCCDKVFTMSMFKYHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADENDDTCGLCGDGGELICCDNCPASYHQDCLPCQDIPDGSWYCYSCLCDICGEVINLKELRSSLPALECAQCERQYHAKCIYGKLLCNEEGGPCAWFCGRRCQQIYMNLRSRVGIPIHTIDGFSCTVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDRIISVASMRLHGTVVAEMPLIATCLENHQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTMAFGFVPIDDLDRKNLSRLRLVSVPGTVILKRNLYECPGTNAGELRNPEPFKVYSRSARKNRDAGGGGGGGGGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSSCENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGLSGRNSLTVGSTCHDKAKGQLVGSCKCCSKLLIQGLERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIIYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPVASGRVLPAWQSARIA
Length2467
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.507
Instability index50.48
Isoelectric point8.53
Molecular weight275835.73
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro
transcription corepressor activity	GO:0003714	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03533
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.95|      18|      77|    1049|    1066|       1
---------------------------------------------------------------------------
 1049- 1066 (37.88/20.57)	LCG.D..GG..ELIC....CDNCPASY
 1072- 1095 (28.57/13.60)	PCQ.DipDG..SWYCysclCDICGEVI
 1126- 1146 (28.50/13.55)	LCNeE..GGpcAWFC....GRRCQQIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.50|      26|      77|    1234|    1268|       2
---------------------------------------------------------------------------
 1162- 1188 (42.31/26.54)	GFSCTVLRNNgDQRVSTA.........ADIAILAEC
 1234- 1268 (39.19/43.66)	GFYTVVLEND.DRIISVAsmrlhgtvvAEMPLIATC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     251.71|      79|     639|    1605|    1706|       3
---------------------------------------------------------------------------
  376-  455 (130.40/70.90)	QSDDL.DGNSSRSKHPSTVGKRKSSQYKM..DERLPIMAEiQEKSIRSTAHRIVMGLQDSTAFP..GSRTSLNMKNKPSYSKSNL
 1623- 1706 (121.31/81.45)	QADTItTTNQSLARTGPELFKTAPFIDNMcdDAKLDAMDE.DELLASIDVDRIVMEHYQATNTPrgSSKSPLEKCNFNGFDENNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.73|      18|      28|     933|     951|       4
---------------------------------------------------------------------------
  933-  951 (28.66/18.25)	PkGARTVL..GKLLEMGIVCK
  960-  979 (29.07/14.28)	P.GSKNVLkdGNITKKGIRCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.05|      27|      34|     809|     841|       5
---------------------------------------------------------------------------
  809-  837 (39.85/35.80)	NDKEQIGSASTEQVSLNLLPgnSNDMNQQ
  845-  871 (44.20/22.21)	NDQARVRIGSAEKIVPEKTP..KKDVKRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.05|      25|      28|     286|     313|       6
---------------------------------------------------------------------------
  286-  313 (34.39/38.51)	EVRLPKQSLScLNQWQLLDPFmaVVCID
  315-  339 (38.66/27.65)	KVRALKKGVA.LKAVNSTVTF..VSCIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.08|      23|      28|     529|     552|       7
---------------------------------------------------------------------------
  529-  552 (35.66/27.38)	ISNEHYCTAAvSEPQAKNIDLEDG
  560-  582 (39.42/25.54)	VSEKDTCLKA.NKDVINNEQHDDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.64|      42|    1459|     880|     932|       8
---------------------------------------------------------------------------
  880-  932 (55.56/61.24)	KFDDNdllVTAVIHKLTARYRNrfSRRLAKKSGFKRlprcrwKSEERRDRKTF
 2345- 2386 (73.08/44.63)	KYGDR...VLATIEDFLARYPN..ATRKTSSGGSNE......HSEAVKKRRGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     318.33|      97|     142|    1910|    2012|      15
---------------------------------------------------------------------------
 1910- 2012 (162.04/103.49)	LANCIIFRQSFNRPNLRYFV..........WPKTKKCLEDIHNfIHaNHNKECGIIYCLSRMDCEKVaAKLREYGHkasHYHGSMDPEDRANIQK..QW.SKDRINIICATVAFGM
 2047- 2156 (156.29/83.61)	LSSCVLFYNYSDYIRLKHMVtqgfaeqgtsAPRGGSSQEQALE.TH.KENLLRMVSYCENDVDCRRL.LQLIHFGE...MFNPSCCAKTCDNCLKelRWvEKDVTNIARQLVDLVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.55|      55|     546|     109|     166|      16
---------------------------------------------------------------------------
  109-  166 (90.06/78.68)	LVFCNND..KQKMQKTVGFPD..MASASDLVIQwtpPSV.ERVYTRRAVARRNQRAKLC.SVLD
  654-  714 (77.50/56.68)	LSFMNDSmcSQEMQSCLNASNgtMGTNVQLGIQ...SSVyEASLIRGFLYLDNEGSPICwTVLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.62|      39|    1398|      49|      87|      17
---------------------------------------------------------------------------
   49-   87 (65.20/37.19)	RTGTSGASTRHPRRDGKSSSLRDAS....KELISTNTPSSSAS
 1438- 1480 (65.42/37.34)	RLGKTAKPPKSPNPNSPSSSPATAAslllRRLPRGRPPPGGAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.57|      21|      21|     481|     501|      25
---------------------------------------------------------------------------
  481-  501 (36.38/26.31)	AEINDPSFHAYDMIESANVDN
  503-  523 (34.19/24.20)	ADSPDELLLGANLLFSHEVDE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03533 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASS
2) ENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGL
3) FPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEIN
4) LLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIM
5) NMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQK
6) SGASTRHPRRDGKSSSLRDASKELISTNTPSSS
7) SSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTK
8) VSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGT
817
1434
435
371
738
53
1567
539
875
1484
484
410
777
85
1610
633










Molecular Recognition Features






MoRF SequenceStartStop




NANANA