<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03532

Description Uncharacterized protein
SequenceMDAKDLVEIGMKEEDITTMLFGKKVIELTEDAFYGSKEERKIFEELFCRTGTSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVKQRRDRGQHKYGHSHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSCLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESKLSNPRNADNPLGLNHSSNFNSTHPRSRKNLLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEINDPSFHAYDMIESANVDNSADSPDELLLGANLLFSHEVDEMLLDDISNEHYCTAAVSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMQSCLNASNGTMGTNVQLGIQSSVYEASLIRGFLYLDNEGSPICWTVLNPEPPRQLICSEPISKASELHGEMNMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQKKQKVNDVPVSYCAIGQYMDHITENPAGCLISNDKEQIGSASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKSEERRDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIRCRCCDKVFTMSMFKYHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADENDDTCGLCGDGGELICCDNCPASYHQDCLPCQLPLRYMWGSDKFEGAQKFPACFRMRTIYMNLRSRVGIPIHTIDGFSCTVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDRIISVASMRLHGTVVAEMPLIATCLENHQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTMAFGFVPIDDLDRKNLSRLRLVSVPGTVILKRNLYECPGTNAGELRNPEPFKVYSRSARKNRDAGGGGGGGGGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSSCENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGLSGRNSLTVGSTCHDKAKGQLVGSCKCCSKLLIQGLERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSDDLHQKRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSLIYTRNEPGESGLCFSSAPYSYIYGLSMPLPSVQRDYTPRPIDISYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPVASGRVLPAWQSARIA
Length2573
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.518
Instability index50.47
Isoelectric point8.56
Molecular weight287846.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03532
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.59|      45|     242|    1347|    1405|       1
---------------------------------------------------------------------------
  883-  927 (76.48/35.54)	DNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKS..EERR
 1347- 1393 (69.11/56.79)	DRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSscENRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.51|      27|      77|     980|    1011|       2
---------------------------------------------------------------------------
  980- 1011 (41.94/35.11)	CCDKVFTmsmfKYHAG.LRQEIPsLNLFLGSGK
 1058- 1085 (54.57/29.96)	CCDNCPA....SYHQDcLPCQLP.LRYMWGSDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.97|      23|     159|     102|     138|       3
---------------------------------------------------------------------------
  112-  138 (31.72/22.20)	CnNDKQKMQkTVGfpDMASASDLVIQ.............W
 1452- 1487 (37.25/14.56)	C.HDKAKGQ.LVG..SCKCCSKLLIQglerlqapsiekaW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.50|      26|      77|    1190|    1224|       4
---------------------------------------------------------------------------
 1118- 1144 (42.31/28.43)	GFSCTVLRNNgDQRVSTA.........ADIAILAEC
 1190- 1224 (39.19/46.81)	GFYTVVLEND.DRIISVAsmrlhgtvvAEMPLIATC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.58|      35|     463|     370|     408|       6
---------------------------------------------------------------------------
  370-  408 (53.38/33.00)	NLLPlLQSDDLD.....GNSSRSKHPSTVGkrkSSQYKMDERLP
  825-  864 (54.20/24.05)	NLLP.GNSNDMNqqvpvKNSDNDQARVRIG...SAEKIVPEKTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.78|      11|     463|    1015|    1025|       7
---------------------------------------------------------------------------
 1015- 1025 (23.06/15.00)	LCQLQAWSIEH
 1475- 1485 (19.73/11.64)	LERLQAPSIEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     210.38|      66|     541|    1628|    1700|       9
---------------------------------------------------------------------------
 1628- 1700 (108.42/89.53)	DRIVMEHY.......QATNTPRG..SSKSPLE..KCNF...NGFDENNLPQELSIMCDHGSKLaFCPeakSHLLEMKDNLLaisHEL
 2164- 2243 (101.96/65.93)	DYIRLKHMvtqgfaeQGTSAPRGgsSQEQALEthKENLlrmVSYCENDVDCRRLLQLIHFGEM.FNP...SCCAKTCDNCL...KEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.26|      54|     275|    1531|    1588|      10
---------------------------------------------------------------------------
 1531- 1588 (84.28/70.41)	MDSVSRNRNPTQESMHQTTESGTMEKNSSHLpAGTKsctRTYLNNHVVQADTITTTNQ
 1804- 1857 (98.98/67.31)	LPSVQRDYTPRPIDISYTEGSGDKQWSSTHF.AWTK...ELEANNKRVFGNRSFRPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.58|      15|     275|    1040|    1054|      11
---------------------------------------------------------------------------
 1040- 1054 (31.19/17.03)	ADENDDTCGLCGDGG
 1323- 1337 (29.39/15.60)	ARKNRDAGGGGGGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.16|      30|     275|      63|      93|      12
---------------------------------------------------------------------------
   63-   93 (45.12/25.33)	DGKSSSLRDASKELiSTNTPSSSASNHKSAR
  339-  368 (54.04/27.16)	ESKLSNPRNADNPL.GLNHSSNFNSTHPRSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.26|      16|     275|     223|     238|      13
---------------------------------------------------------------------------
  223-  238 (30.64/18.38)	VDHIYESPDKVM....RLFS
  499-  518 (22.62/11.47)	VDNSADSPDELLlganLLFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.26|      17|      81|     460|     495|      15
---------------------------------------------------------------------------
  431-  458 (23.62/13.53)	DSTAFPgsrtslnmknkPSYSKSNLTQS
  464-  480 (34.64/40.93)	DPLYFP...........PNYSPSDLVEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.56|      33|     511|     716|     748|      18
---------------------------------------------------------------------------
  716-  748 (61.48/40.18)	EPPRQLICSEPISKASELHGEMNMECGMLTSGP
 2037- 2065 (48.51/29.88)	..PKTKKCLEDIHNF..IHANHNKECGIIYCLS
 2070- 2093 (34.57/18.82)	EKVAAKL.REYGHKASHYHGSMDPE........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03532 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASS
2) ENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGL
3) FPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEIN
4) LLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIM
5) NMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQK
6) SGASTRHPRRDGKSSSLRDASKELISTNTPSSS
7) SSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTK
8) VSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGT
817
1390
435
371
738
53
1523
539
875
1440
484
410
777
85
1566
633










Molecular Recognition Features






MoRF SequenceStartStop




NANANA