<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03531

Description Uncharacterized protein
SequenceMDAKDLVEIGMKEEDITTMLFGKKVIELTEDAFYGSKEERKIFEELFCRTGTSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVKQRRDRGQHKYGHSHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSCLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESKLSNPRNADNPLGLNHSSNFNSTHPRSRKNLLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEINDPSFHAYDMIESANVDNSADSPDELLLGANLLFSHEVDEMLLDDISNEHYCTAAVSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMQSCLNASNGTMGTNVQLGIQSSVYEASLIRGFLYLDNEGSPICWTVLNPEPPRQLICSEPISKASELHGEMNMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQKKQKVNDVPVSYCAIGQYMDHITENPAGCLISNDKEQIGSASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKSEERRDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIRCRCCDKVFTMSMFKYHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADENDDTCGLCGDGGELICCDNCPASYHQDCLPCQDIPDGSWYCYSCLCDICGEVINLKELRSSLPALECAQCERQYHAKCIYGKLLCNEEGGPCAWFCGRRCQQIYMNLRSRVGIPIHTIDGFSCTVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDRIISVASMRLHGTVVAEMPLIATCLENHQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTMAFGFVPIDDLDRKNLSRLRLVSVPGTVILKRNLYECPGTNAGELRNPEPFKVYSRSARKNRDAGGGGGGGGGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSSCENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGLSGRNSLTVGSTCHDKAKGQLVGSCKCCSKLLIQGLERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSDDLHQKRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSLIYTRNEPGESGLCFSSAPYSYIYGLSMPLPSVQRDYTPRPIDISYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPVASGRVLPAWQSARIA
Length2598
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.508
Instability index50.57
Isoelectric point8.39
Molecular weight290440.96
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro
transcription corepressor activity	GO:0003714	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03531
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.95|      18|      77|    1049|    1066|       1
---------------------------------------------------------------------------
 1049- 1066 (37.88/27.76)	LCG.D..GG..ELIC....CDNCPASY
 1072- 1095 (28.57/18.28)	PCQ.DipDG..SWYCysclCDICGEVI
 1126- 1146 (28.50/18.20)	LCNeE..GGpcAWFC....GRRCQQIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.50|      26|      77|    1234|    1268|       2
---------------------------------------------------------------------------
 1162- 1188 (42.31/25.73)	GFSCTVLRNNgDQRVSTA.........ADIAILAEC
 1234- 1268 (39.19/42.49)	GFYTVVLEND.DRIISVAsmrlhgtvvAEMPLIATC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     298.50|      85|     274|    1544|    1632|       3
---------------------------------------------------------------------------
   82-  150 (21.02/ 6.30)	.....PSSSAsnhKSARC..RVVESFTYGNLSSYLVfcnndkqkmqktvgfpdmasasdlviqwTP.PSVERVYTRR...............................................
 1544- 1632 (141.49/127.85)	YLR..PGLSG...KVKDC..DSDHAHTYGTSSSYNV............................NKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLpAGTKsctRTYLNNHVVQADTITTTNQ
 1821- 1901 (135.99/106.93)	YTRnePGESG...L...CfsSAPYSYIYGLS.................................MPLPSVQRDYTPRPIDISYTEGSGDKQWSSTHF.AWTK...ELEANNKRVFGNRSFRPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.46|      17|     507|    1015|    1031|       4
---------------------------------------------------------------------------
 1015- 1031 (32.52/22.22)	LCQLQAWSIEHKARKER
 1519- 1535 (30.94/20.73)	LERLQAPSIEKAWRSLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.67|      13|     507|     430|     442|       5
---------------------------------------------------------------------------
  430-  442 (24.48/12.77)	QDSTAFP.GSRTSL
  927-  940 (20.19/ 9.28)	RDRKTFPkGARTVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.26|      16|     277|     223|     238|      10
---------------------------------------------------------------------------
  223-  238 (30.64/19.52)	VDHIYESPDKVM....RLFS
  499-  518 (22.62/12.28)	VDNSADSPDELLlganLLFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.44|      19|      25|     344|     368|      12
---------------------------------------------------------------------------
  344-  365 (31.98/31.61)	N..PRNADNPLGLNHSsnfNSTHP
  370-  390 (30.46/12.17)	NllPLLQSDDLDGNSS...RSKHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     319.31|      97|     142|    2041|    2143|      14
---------------------------------------------------------------------------
 2041- 2143 (161.96/120.24)	LANCIIFRQSFNRPNLRYFV..........WPKTKKCLEDIHNfIHaNHNKECGIIYCLSRMDCEKVaAKLREYGHkasHYHGSMDPEDRANIQK..QW.SKDRINIICATVAFGM
 2178- 2287 (157.35/97.90)	LSSCVLFYNYSDYIRLKHMVtqgfaeqgtsAPRGGSSQEQALE.TH.KENLLRMVSYCENDVDCRRL.LQLIHFGE...MFNPSCCAKTCDNCLKelRWvEKDVTNIARQLVDLVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.36|      52|     278|    1385|    1447|      16
---------------------------------------------------------------------------
 1393- 1445 (83.71/72.89)	SVAVTAADAGQQRPFEDRSPVSCAVDSL.ADE.LRSLKINS......SCENRRRlGKTAKP
 1633- 1692 (74.65/38.56)	SLARTGPELFKTAPFIDNMCDDAKLDAMdEDElLASIDVDRivmehyQATNTPR.GSSKSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.86|      22|      25|     629|     653|      19
---------------------------------------------------------------------------
  629-  653 (31.40/25.19)	SCegTNNAMVISEPQlLFVSPHDGT
  655-  676 (41.45/22.00)	SF..MNDSMCSQEMQ.SCLNASNGT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03531 with Med34 domain of Kingdom Viridiplantae
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