<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03529

Description Uncharacterized protein
SequenceMKEPRPDGVGRRRSWRKSPFSLCLLRSLRRRHDESRSRSRLNRGGAAISIWQGRGSCLIASIIADCLPFGFKLWLVINRMDAKDLVEIGMKEEDITTMLFGKKVIELTEDAFYGSKEERKIFEELFCRTGTSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVKQRRDRGQHKYGHSHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSCLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESKLSNPRNADNPLGLNHSSNFNSTHPRSRKNLLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEINDPSFHAYDMIESANVDNSADSPDELLLGANLLFSHEVDEMLLDDISNEHYCTAAVSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMQSCLNASNGTMGTNVQLGIQSSVYEASLIRGFLYLDNEGSPICWTVLNPEPPRQLICSEPISKASELHGEMNMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQKKQKVNDVPVSYCAIGQYMDHITENPAGCLISNDKEQIGSASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKSEERRDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIRCRCCDKVFTMSMFKYHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADENDDTCGLCGDGGELICCDNCPASYHQDCLPCQDIPDGSWYCYSCLCDICGEVINLKELRSSLPALECAQCERQYHAKCIYGKLLCNEEGGPCAWFCGRRCQQIYMNLRSRVGIPIHTIDGFSCTVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDRIISVASMRLHGTVVAEMPLIATCLENHQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTMAFGFVPIDDLDRKNLSRLRLVSVPGTVILKRNLYECPGTNAGELRNPEPFKVYSRSARKNRDAGGGGGGGGGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSSCENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGLSGRNSLTVGSTCHDKAKGQLVGSCKCCSKLLIQGLERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSDDLHQKRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSLIYTRNEPGESGLCFSSAPYSYIYGLSMPLPSVQRDYTPRPIDISYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPVASGRVLPAWQSARIA
Length2677
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.507
Instability index52.13
Isoelectric point8.62
Molecular weight299544.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro
transcription corepressor activity	GO:0003714	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03529
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     589.27|     200|     253|    1721|    1972|       1
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 1721- 1953 (302.69/285.13)	FKTA..PFIDNMCDDAKLDAM..DEDELLASIDVDRI...VMEHYQATNTPRGSSKSpLEKCNfngfDENNLPQELSIMCDHgsKLAFC.PEAKSHLleMKDNllaiSHELidgqlsPQQSDDL...HQKRALLKK...QIELLG.EYTARLTQDEERQQSHSMASTTahqghhptsILSSSFVKDTniFQSLIYTRNEPG.ESGLCFSSAPYS....YIYGLS.MPLPSVQ...RDYTPRPidiSYTEGSGD........KQWS
 1976- 2207 (286.58/171.19)	FRPNqrEIINATMSGNDLPALicNGVTLVVSPLVSLIqdqIMHLLQANISAAYLSAS.MEWSE....QQEILRELMSPTCTY..KLLYVtPEKIAKI..VIDE....AHCV......SQWGHDFrpdYQHLGILKQkfpQTPVLAlTATATASVKEDVVQVLGLANCI.........IFRQSFNRPN..LRYFVWPKTKKClEDIHNFIHANHNkecgIIYCLSrMDCEKVAaklREYGHKA...SHYHGSMDpedraniqKQWS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.95|      18|      77|    1128|    1145|       2
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 1128- 1145 (37.88/18.51)	LCG.D..GG..ELIC....CDNCPASY
 1151- 1174 (28.57/12.10)	PCQ.DipDG..SWYCysclCDICGEVI
 1205- 1225 (28.50/12.05)	LCNeE..GGpcAWFC....GRRCQQIY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.10|      15|     253|     418|     432|       3
---------------------------------------------------------------------------
  418-  432 (27.70/16.47)	ESKLSNPRNADNPLG
  665-  679 (27.40/16.21)	ESQLANTDVMDRPAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     243.39|      70|     251|    1296|    1371|       4
---------------------------------------------------------------------------
 1227- 1287 (73.87/47.49)	.....NLRSRVgipIHtID..GFSCTVLRNNgDQRVSTA............ADIAILAEC..NMKLVIALSIME..ECFLPIID
 1296- 1371 (113.94/97.48)	PPILYNWRSDF...VH.LDykGFYTVVLEND.DRIISVASMRL...HGTVVAEMPLIATCleNHQQGMCRRLMDyiEQMLKSLK
 1381- 1425 (55.58/32.44)	PSLVDTWTMAF..........GF..VPIDDL.DR.KNLSRLRLvsvPGTVILKRNLY.EC........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.73|      18|      28|    1012|    1030|       5
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 1012- 1030 (28.66/20.16)	PkGARTVL..GKLLEMGIVCK
 1039- 1058 (29.07/15.73)	P.GSKNVLkdGNITKKGIRCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.11|      35|    1087|     435|     473|       7
---------------------------------------------------------------------------
  435-  469 (62.74/37.75)	HSSNFNSTHPRSRKN.......LLPLLQ..SDDLDGNSSRS.KHP
  475-  503 (12.37/10.71)	............RKSsqykmdeRLPIMA....EIQEKSIRStAHR
  519-  553 (52.00/28.95)	TSLNMKNKPSYSKSN.......LTQSIQdkSDPLYFPPNYS...P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.70|      55|    1088|    1458|    1543|       8
---------------------------------------------------------------------------
  952- 1006 (94.47/38.41)	ASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKS..EERR
 1460- 1516 (85.22/83.58)	GGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSscENRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.51|      19|      21|     713|     732|      13
---------------------------------------------------------------------------
  713-  732 (29.99/22.50)	NNAMVISEPQlLFVSPHDGT
  737-  755 (35.52/22.16)	NDSMCSQEMQ.SCLNASNGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.26|      16|     279|     302|     317|      14
---------------------------------------------------------------------------
  302-  317 (30.64/17.56)	VDHIYESPDKVM....RLFS
  578-  597 (22.62/11.05)	VDNSADSPDELLlganLLFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.08|      67|    1381|     191|     268|      20
---------------------------------------------------------------------------
  191-  268 (92.44/80.90)	CnNDKQKMQkTVGfpDMASASDLVIQ....WTPPSVERVYtrRAVaRRNQRAKlcsvLDLERVDIT.SVKQRRDRGQHKYGHS
 1575- 1646 (113.64/63.13)	C.HDKAKGQ.LVG..SCKCCSKLLIQglerLQAPSIEKAW..RSL.RNTQVAR....KNYLRPGLSgKVKDCDSDHAHTYGTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.05|      27|      35|     888|     916|      26
---------------------------------------------------------------------------
  888-  916 (39.85/34.12)	NDKEQIGSASTEQVSLNLLPgnSNDMNQQ
  924-  950 (44.20/30.08)	NDQARVRIGSAEKIVPEKTP..KKDVKRQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03529 with Med34 domain of Kingdom Viridiplantae
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