<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03528

Description Uncharacterized protein
SequenceMKEPRPDGVGRRRSWRKSPFSLCLLRSLRRRHDESRSRSRLNRGGAAISIWQGRGSCLIASIIADCLPFGFKLWLVINRMDAKDLVEIGMKEEDITTMLFGKKVIELTEDAFYGSKEERKIFEELFCRTGTSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVKQRRDRGQHKYGHSHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSCLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESKLSNPRNADNPLGLNHSSNFNSTHPRSRKNLLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEINDPSFHAYDMIESANVDNSADSPDELLLGANLLFSHEVDEMLLDDISNEHYCTAAVSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMQSCLNASNGTMGTNVQLGIQSSVYEASLIRGFLYLDNEGSPICWTVLNPEPPRQLICSEPISKASELHGEMNMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQKKQKVNDVPVSYCAIGQYMDHITENPAGCLISNDKEQIGSASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKSEERRDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIRCRCCDKVFTMSMFKYHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADENDDTCGLCGDGGELICCDNCPASYHQDCLPCQDIPDGSWYCYSCLCDICGEVINLKELRSSLPALECAQCERQCGPCAWFCGRRCQQIYMNLRSRVGIPIHTIDGFSCTVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDRIISVASMRLHGTVVAEMPLIATCLENHQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTMAFGFVPIDDLDRKNLSRLRLVSVPGTVILKRNLYECPGTNAGELRNPEPFKVYSRSARKNRDAGGGGGGGGGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSSCENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGLSGRNSLTVGSTCHDKAKGQLVGSCKCCSKLLIQGLERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSDDLHQKRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSLIYTRNEPGESGLCFSSAPYSYIYGLSMPLPSVQRDYTPRPIDISYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPVASGRVLPAWQSARIA
Length2681
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.508
Instability index52.24
Isoelectric point8.64
Molecular weight300035.02
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro
transcription corepressor activity	GO:0003714	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03528
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.05|      27|      34|     888|     920|       1
---------------------------------------------------------------------------
  888-  916 (39.85/40.09)	NDKEQIGSASTEQVSLNLLPgnSNDMNQQ
  924-  950 (44.20/24.86)	NDQARVRIGSAEKIVPEKTP..KKDVKRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     252.08|      77|     274|    1608|    1696|       2
---------------------------------------------------------------------------
 1608- 1696 (116.09/104.59)	YLR..PGLSGKvkdC..DSDHAHTYGTSssynvNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLpAGTKsctRTYLNNHVVQADTITTTNQ
 1885- 1965 (135.99/87.49)	YTRnePGESGL...CfsSAPYSYIYGLS.....MPLPSVQRDYTPRPIDISYTEGSGDKQWSSTHF.AWTK...ELEANNKRVFGNRSFRPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.06|      60|    1166|    1039|    1180|       3
---------------------------------------------------------------------------
  951- 1015 (95.52/64.64)	KASSRHKCkfddNDLLVTAVIHKLTARYRNRF.SRRLAKKSGfKRLPRCR...W....KSEERRDRKTFPKGA
 1052- 1119 (95.54/163.97)	KKGIRCRC....CDKVFTMSMFKYHAGLRQEIpSLNLFLGSG.KSYTLCQlqaWsiehKARKERAKCTMPLQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.10|      15|     254|     418|     432|       4
---------------------------------------------------------------------------
  418-  432 (27.70/15.01)	ESKLSNPRNADNPLG
  665-  679 (27.40/14.78)	ESQLANTDVMDRPAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     199.47|      33|    1166|    1148|    1180|       5
---------------------------------------------------------------------------
 1126- 1147 (36.14/16.80)	.CGLCGD..GGELIC......CD.N.....CPA..S.YH....Q
 1148- 1180 (65.52/37.30)	DCLPCQDIPDGSWYCYSC..LCD.I.....CGE..V.INLKELR
 1181- 1216 (41.13/20.28)	SSLPALECAQCERQCGPCawFCGrR.....CQQ..IyMNLRS.R
 1225- 1260 (26.06/ 9.77)	DGFSCTVLRNNGDQRVST..AAD.IailaeCNMklV.IAL....
 2332- 2352 (30.63/12.96)	..........GEMFNPSC..CAK.T.....CDN..C...LKELR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.20|      37|    1166|     588|     628|       6
---------------------------------------------------------------------------
  588-  628 (57.55/43.16)	LLLGANLL.FSHE.VDEMLLDDISNE.HYCTAAVSepqaKNIDL
 1795- 1834 (48.65/27.05)	LEMKDNLLaISHElIDGQLSPQQSDDlHQKRALLK....KQIEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.37|      16|     924|     457|     472|      16
---------------------------------------------------------------------------
  457-  472 (31.03/18.45)	DDLD.GNSSRSKH...PSTV
 1382- 1401 (20.34/ 9.34)	DDLDrKNLSRLRLvsvPGTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.54|      63|    1350|     794|     869|      18
---------------------------------------------------------------------------
  794-  862 (95.89/68.48)	PEPPRqliCSEPISkaSELHGEMNMECGMLTSGPKQTSKLDSSKnNRKRSKKAANI......EDKGSQKKQKVND
 2145- 2213 (108.65/49.70)	PKTKK...CLEDIH..NFIHANHNKECGIIYCLSRMDCEKVAAK.LREYGHKASHYhgsmdpEDRANIQKQWSKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.50|      14|    1377|     707|     730|      21
---------------------------------------------------------------------------
  707-  722 (21.10/31.15)	LSCegTNNAMVISEPQ
  733-  746 (27.40/ 9.15)	LSF..MNDSMCSQEMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03528 with Med34 domain of Kingdom Viridiplantae
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