<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03527

Description Uncharacterized protein
SequenceMKEPRPDGVGRRRSWRKSPFSLCLLRSLRRRHDESRSRSRLNRGGAAISIWQGRGSCLIASIIADCLPFGFKLWLVINRMDAKDLVEIGMKEEDITTMLFGKKVIELTEDAFYGSKEERKIFEELFCRTGTSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVKQRRDRGQHKYGHSHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSCLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESKLSNPRNADNPLGLNHSSNFNSTHPRSRKNLLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEINDPSFHAYDMIESANVDNSADSPDELLLGANLLFSHEVDEMLLDDISNEHYCTAAVSEPQAKNIDLEDGPSGPSSVVSEKDTCLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGAPSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMQSCLNASNGTMGTNVQLGIQSSVYEASLIRGFLYLDNEGSPICWTVLNPEPPRQLICSEPISKASELHGEMNMECGMLTSGPKQTSKLDSSKNNRKSNDKEQIGSASTEQVSLNLLPGNSNDMNQQVPVKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKSEERRDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIRCRCCDKVFTMSMFKYHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADENDDTCGLCGDGGELICCDNCPASYHQDCLPCQDIPDGSWYCYSCLCDICGEVINLKELRSSLPALECAQCERQYHAKCIYGKLLCNEEGGPCAWFCGRRCQQIYMNLRSRVGIPIHTIDGFSCTVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDRIISVASMRLHGTVVAEMPLIATCLENHQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTMAFGFVPIDDLDRKNLSRLRLVSVPGTVILKRNLYECPGTNAGELRNPEPFKVYSRSARKNRDAGGGGGGGGGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSSCENRRRLGKTAKPPKSPNPNSPSSSPATAASLLLRRLPRGRPPPGGASLVGLSGRNSLTVGSTCHDKAKGQLVGSCKCCSKLLIQGLERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSDDLHQKRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSLIYTRNEPGESGLCFSSAPYSYIYGLSMPLPSVQRDYTPRPIDISYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPVASGRVLPAWQSARIA
Length2651
PositionUnknown
OrganismOryza meridionalis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.505
Instability index51.42
Isoelectric point8.61
Molecular weight296823.40
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro
transcription corepressor activity	GO:0003714	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03527
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.02|      15|     253|     418|     432|       1
---------------------------------------------------------------------------
  418-  432 (26.36/13.46)	ESKLSNPRNADNPLG
  620-  634 (26.37/13.47)	EPQAKNIDLEDGPSG
  665-  679 (27.28/14.21)	ESQLANTDVMDRPAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.09|      58|     554|    1537|    1621|       2
---------------------------------------------------------------------------
  202-  268 (80.17/38.70)	VGfpDMASASDLVIQ....WTPPSVERVYtrRAVaRRNQRAKlcsvLDLERVDIT.SVKQRRDRGQHKYGHS
 1539- 1601 (94.92/106.57)	VG..SCKCCSKLLIQglerLQAPSIEKAW..RSL.RNTQVAR....KNYLRPGLSgKVKDCDSDHAHTYGTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.95|      18|      77|    1083|    1100|       3
---------------------------------------------------------------------------
 1083- 1100 (37.88/19.78)	LCG.D..GG..ELIC....CDNCPASY
 1106- 1129 (28.57/12.98)	PCQ.DipDG..SWYCysclCDICGEVI
 1160- 1180 (28.50/12.93)	LCNeE..GGpcAWFC....GRRCQQIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.26|      54|     278|    1609|    1666|       4
---------------------------------------------------------------------------
 1609- 1666 (84.28/68.15)	MDSVSRNRNPTQESMHQTTESGTMEKNSSHLpAGTKsctRTYLNNHVVQADTITTTNQ
 1882- 1935 (98.98/65.14)	LPSVQRDYTPRPIDISYTEGSGDKQWSSTHF.AWTK...ELEANNKRVFGNRSFRPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.35|      57|     252|    1427|    1483|       5
---------------------------------------------------------------------------
 1427- 1483 (96.33/60.34)	SVAVTAADAGQQRPFEDRSPVSCAVDSL.ADE.LRSLKINSSCENRRRLGKTAK.PPKSP
 1667- 1726 (85.02/52.31)	SLARTGPELFKTAPFIDNMCDDAKLDAMdEDElLASIDVDRIVMEHYQATNTPRgSSKSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.28|      33|     253|     506|     611|       8
---------------------------------------------------------------------------
  436-  470 (53.80/36.83)	SSNFNSTHPRSRKNLLPLLQ..SDDLDGNSSRSkhPS
  520-  554 (56.48/106.83)	SLNMKNKPSYSKSNLTQSIQdkSDPLYFPPNYS..PS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.50|      26|      76|    1268|    1302|      11
---------------------------------------------------------------------------
 1196- 1222 (42.31/31.44)	GFSCTVLRNNgDQRVSTA.........ADIAILAEC
 1268- 1302 (39.19/51.72)	GFYTVVLEND.DRIISVAsmrlhgtvvAEMPLIATC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.26|      16|     253|     574|     611|      15
---------------------------------------------------------------------------
  302-  317 (30.64/ 7.46)	VDHIYESPDKVM....RLFS
  578-  597 (22.62/36.44)	VDNSADSPDELLlganLLFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     319.31|      97|     142|    2094|    2196|      16
---------------------------------------------------------------------------
 2094- 2196 (161.96/126.39)	LANCIIFRQSFNRPNLRYFV..........WPKTKKCLEDIHNfIHaNHNKECGIIYCLSRMDCEKVaAKLREYGHkasHYHGSMDPEDRANIQK..QW.SKDRINIICATVAFGM
 2231- 2340 (157.35/102.87)	LSSCVLFYNYSDYIRLKHMVtqgfaeqgtsAPRGGSSQEQALE.TH.KENLLRMVSYCENDVDCRRL.LQLIHFGE...MFNPSCCAKTCDNCLKelRWvEKDVTNIARQLVDLVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.83|      51|      98|     900|     955|      21
---------------------------------------------------------------------------
  900-  955 (80.08/60.67)	KDVKRQKASSRHKCkfddNDLLVTAVIHKLTARYRNRF.SRRLAKKSGfKRLPRCR...W
 1001- 1055 (85.75/50.70)	KDGNITKKGIRCRC....CDKVFTMSMFKYHAGLRQEIpSLNLFLGSG.KSYTLCQlqaW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.72|      22|      42|     688|     714|      24
---------------------------------------------------------------------------
  688-  714 (34.09/34.25)	DTVLE..GNEMSSEEMTkggqlSCEGTNN
  730-  753 (36.63/22.99)	DGTLSfmNDSMCSQEMQ.....SCLNASN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03527 with Med34 domain of Kingdom Viridiplantae
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